Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq757 246 8e-61 seq447 113 1e-20 >seq757 Length=83746 Score = 246 bits (272), Expect = 8e-61 Identities = 416/600 (69%), Gaps = 2/600 (0%) Strand=Plus/Minus Query 2382 CCATGTCACACCCCCGCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACC 2441 ||||||||||||||||| |||||||| |||| |||||||||||| || || || Sbjct 55084 CCATGTCACACCCCCGCAATATCAAGGCTGATGGGCTCGTACTGGTCGGTATCACCAACA 55025 Query 2442 CGCTCCTGGATACGCACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCC 2501 |||| | | || | ||| | ||||| || || |||||| || ||||||||||| Sbjct 55024 CGCTGATACACGCGGATGTAGGACTTGGAGCCAACCACCTGGCAGGCGTCGCCGATGGCT 54965 Query 2502 TGCATTGCACGCTGCCAACGTTCGTCATCGATCTGCAGGCGGCGCAGGGCAAGCACGCTG 2561 ||||| || |||||||| ||||| || || | || ||||||| || || |||| | Sbjct 54964 TGCATGGCGCGCTGCCAGCGTTCATCGGTAATTTCCATACGGCGCAACGCCAGGACGCGG 54905 Query 2562 CCGGTACGGATGTTCCCTGCTTGGTCCACGCGGAACGCATCGTTGATCAGCGTGATGACC 2621 | || ||||||| ||| |||||| ||||| ||||| || | |||||||| || Sbjct 54904 GCTGTGCGGATGTCGCCTTTTTGGTCAGTCCGGAAGGCATCATTTACCAGCGTGACCACT 54845 Query 2622 TCCGCGCGAGCGCCTTCTGTCCATTCGTGGAGGCACTCGTCGATCAACGCCTTGGCCGCC 2681 || | ||| || || ||||| || | ||||| ||||| ||||| ||| || ||| Sbjct 54844 TCGGGGCGTGCCCCGGTGGTCCAGTCCCGCAGGCATTCGTCAATCAATGCCCGCGCAGCC 54785 Query 2682 TGCAGGCGCTCGTCGAAGGCGATGTTGTCGGCCATGGCCCGAATGACCTTGTAGCGACCG 2741 || ||||| |||||||| |||||| | || | ||| || |||| |||| | || || Sbjct 54784 TGGAGGCGTTCGTCGAAAGCGATGCTTTCCTGTACGGCACGCATGATCTTGAAACGCCCA 54725 Query 2742 TCGAAGCTGACCAGGGAGGCGTTGCCCTTCTTGCCACCTACCTTCGCCTGGTACTGCTCG 2801 |||||||||| |||| | | || |||||||| || || | || || |||||||||| Sbjct 54724 TCGAAGCTGATCAGGCTGACATTTCCCTTCTTCCCGCCGATCTGGGCGCCGTACTGCTCG 54665 Query 2802 GCCGACAGTGTGATGAAGGCTTCGATATCGCCGAATGTCGCCAGTTTGAAATCCAGCAAC 2861 || ||| || |||||||| ||||| ||||| | || ||||| | | || | Sbjct 54664 GCGCTGAGTTCGACAAAGGCTTCAATATCACCGAAAGCCGAGGCCTTGAATTTCGCCAGC 54605 Query 2862 GCCTTGTTCAGAGCCTTCCCCTTGGCAACGATCTCCTGCA-CAAGGCGGTCGCGCTCCAG 2920 | | | | || | || | || | | ||| |||||| || |||||||| Sbjct 54604 ACGTCGCTGGCGGCGCGGGCTTTTTCCACCAGGCCAAGCACCAAGGC-ATCCCGCTCCAG 54546 Query 2921 GTCGATGGGCTTGATCATTTCTTCAGGTACCAGGCGCCCCTTGGCGTCCATGCGGTACCC 2980 |||||| ||||||||||| ||| || | ||| ||| | ||||| | ||| || || Sbjct 54545 GTCGATAGGCTTGATCATGCTTTCCGGGATCAGTCGCTTTTGCGCGTCGACGCGATAGCC 54486 Score = 152 bits (168), Expect = 1e-32 Identities = 327/486 (67%), Gaps = 2/486 (0%) Strand=Plus/Plus Query 13290 GCCGAGCAATACCGGCGCACCCTGGTGCGCAGCGCCCATGCCGAATGGGGCCTGTCGGCG 13349 || |||| ||||| ||| |||| || | |||||| || ||||||||| || || Sbjct 59498 GCGGAGCGCTACCGTCGCGACCTGACCCGTATCGCCCAGGCTGAATGGGGCTTGGATGCT 59557 Query 13350 CCGATCGCCACCTTTGCCGCACAGGTTCACCAGGAAAGCCGTTGGC-GTGCTGATGCCCG 13408 ||| | ||||||| ||||||||| | |||||||||||||| ||| || | || || Sbjct 59558 CCGTTGTCCACCTTCGCCGCACAGATCCACCAGGAAAGCCGCTGGAAGTTC-GACGCGAA 59616 Query 13409 CTCGCCTGTTGGTGCCCAGGGTCTGGCGCAGTTCATGCCCGGAACCGCTGAGTGGATCGC 13468 ||||| || ||||| || || ||| ||| | |||||| ||||| ||| | || Sbjct 59617 ATCGCCGGTCGGTGCGCAAGGCTTGGGCCAGGTGATGCCCTCGACCGCCACCTGGCTTGC 59676 Query 13469 CGGCCTGTATCCGGCCGTCCTCGGCACCAATCAGCCGTTCAATCCAGGCTGGGCACTGCG 13528 || |||| || | |||||| | | | |||| || || | ||| | ||| Sbjct 59677 CGAGCTGTTCCCCAAGGCCCTCGGAAAGATCGAACCGTATAACCCGGTTTGGTCCATGCA 59736 Query 13529 CGCGCTGGTCACCTACGACCGTTGGCTCTACGACCGAAACCAGGCCTCCAGCGAGTGTGA 13588 ||||| |||| ||| ||||| ||||| |||| | |||||| || || || Sbjct 59737 GGCGCTTGTCAGCTATGACCGCTGGCTGGCGAACCGCATCCAGGCGCGTGGCCCCTGCGA 59796 Query 13589 TCGCTGGGCATTCGTACTGTCCGCTTACAACGGCGGCCAGGGGTGGGTAAATCGCGACCG 13648 | |||| | | || ||||| || |||||||| || ||||| | || || Sbjct 59797 ACAAGGGGCGCTGATCCTTTCCGCCTATAACGGCGGTTTTGGCTGGGTGATCAAAGATCG 59856 Query 13649 TAGGCTGGCCTTGGCATCCGGCGCCGACCAGCTGGCCTGGTTCGATTCCGTCGAGCGCTT 13708 | | |||| | ||| || ||||| | |||| |||||||| | || ||||| || || Sbjct 59857 CAAGTTGGCATCGGCTAAGGGTGCCGATCCGCTGACCTGGTTCAACTCTGTCGAACGGTT 59916 Query 13709 CAACGCCGGGCGCTCGGCCGCCAACTTCCGCGAGAACCGCAACTACCCGCGCCTCATCCT 13768 ||| ||| ||||| ||||| ||| | || ||||| | ||||||||||| ||||| Sbjct 59917 CAATAACGGCCGCTCCGCCGCTGCGTTCAGGGAAAACCGTCAATACCCGCGCCTGATCCT 59976 Query 13769 GCTGCG 13774 | |||| Sbjct 59977 GTTGCG 59982 Score = 132 bits (146), Expect = 1e-26 Identities = 287/426 (67%), Gaps = 10/426 (2%) Strand=Plus/Plus Query 14895 CAGTACGTGCTTCGCGACGACTACATCCGCGGCCAGAGCGTGATCGAGATGAAGCTCGAT 14954 || ||||||| || || |||||| | |||||||| | |||||||||| ||||| ||| Sbjct 61081 CACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCAAGCTTGAT 61140 Query 14955 AGCCTGGCCACGAAACTGGAAAACGCGCAGTTGCGCGGCTTGGTAGGAGCAAACCATGCA 15014 ||||| || || |||| || || || || || || || || | Sbjct 61141 GCGTTGGCCCTCAAGCTAGAAACCGTTCAATTAAAAGGACTGA----AGTAA----TGAA 61192 Query 15015 AACTGATATGGCCAAGATTCGCCGGGAATCCCTGCGCTGGCTGATTCTGCTGACCCTGAA 15074 | || ||||| | ||||||||||||||||||||| || | ||||||| | Sbjct 61193 CATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAAGACCCTGGA 61252 Query 15075 CAACGCTCGACCGGTGGGTGCCTACGAAGGTCCGGTCCTTTCCGTGGCGCAGAGCGAGTA 15134 || | | || || || | | | | || | | || | ||| ||| || || Sbjct 61253 CACCTCGCGCCCCGTAGATCCTCATGAGGCTATCGTGTTGTCCACCATCCAGGGCATCTA 61312 Query 15135 TCCCGACGCGA-CACCACTGGAGATCCGCCGCGAGCTGGACTACTTGGCCGACCGTGACC 15193 ||||||||| | ||||| ||||| | |||||||| || |||||| ||||||||||| || Sbjct 61313 TCCCGACGCCACCACCA-TGGAGCTGCGCCGCGAACTCGACTACCTGGCCGACCGTAGCC 61371 Query 15194 TGGTGACCCTGGTCAAGGAACCGTCCGGCAAGTGGTTCGCCGATTTGACCCGGTACGGCA 15253 ||||||| || | ||| | || ||| |||| || | |||||| ||||| Sbjct 61372 TGGTGACGCTAGACAAAAAGCCCAACGGTGTGTGGATCTGTGGCCTGACCCACTACGGGG 61431 Query 15254 CCGACGTCGCCGAGTACACCATCGACTGCGAACCCGGCATCGCTCGCCCCAAGAAGTACT 15313 |||| | || || |||||||||| |||| |||| ||| | || || || | ||||||| Sbjct 61432 TCGACATTGCGGAATACACCATCGCCTGCAAACCAGGCGTTGCCCGACCAGAAAAGTACT 61491 Query 15314 GGTGAC 15319 |||||| Sbjct 61492 GGTGAC 61497 Score = 111 bits (122), Expect = 4e-20 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 16381 GCCCTGAGCAGCCGGCCGAGCAACCTGCGCGGCCTGCAGGGCGACGTGGTGATCGACGAG 16440 || |||| ||| || ||| |||||||||||||| ||||||| || ||||||||||| Sbjct 62388 GCGCTGACCAGTCGTCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGAA 62447 Query 16441 GCGGCGTTCCACGAGTCCCTGGAGGAACTGCTGAAGGCCGCCCTGGCGCTGACGATGTGG 16500 || |||||||| | | | ||| || |||||||| || ||| |||| ||| ||| ||| Sbjct 62448 GCCGCGTTCCATGCGGACTTGGCCGAGCTGCTGAAAGCGGCCATGGCTCTGTTGATCTGG 62507 Query 16501 GGTAACAAGGTCCGCCTGATCAGCACCCACAACGGC 16536 || | |||| |||||||||||||| ||||| Sbjct 62508 GGCGGTGAAGTCCATGTGATCAGCACCCACGACGGC 62543 >seq447 Length=48793 Score = 113 bits (124), Expect = 1e-20 Identities = 128/168 (76%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 28202 ATGCAGGAGGCGACTGGTAAGGCCGTTTCTGAAACCGTGGCCGAGTTCTCCAAGCTGGCC 28261 |||||||| || || || ||||| || || || || |||||||||||||||||||| Sbjct 24378 ATGCAGGAAGCCACCGGCAAGGCTGTGAGCGAGACTGTCGCCGAGTTCTCCAAGCTGGCA 24437 Query 28262 GATGATCCGGTCAAGGCGTC-GCAGCAGCTCAATGACCGCTATCACTACCTGACGGCCTC 28320 || || ||||| ||||| || || || ||| || || | || ||||| |||||||| || Sbjct 24438 GACGACCCGGTAAAGGCCTCTGCTGC-GCTGAACGAGCAGTACCACTATCTGACGGCTTC 24496 Query 28321 GGTGTACGAGCAGATCACTGCCCTGGAGAGGCAGGGGGA-CACGCTGG 28367 ||| ||| |||||| | || |||||| |||||| || ||||| || Sbjct 24497 GGTTTACTCGCAGATTGCCGCACTGGAGCAGCAGGGCGATCACGCCGG 24544 Score = 113 bits (124), Expect = 1e-20 Identities = 396/608 (65%), Gaps = 18/608 (3%) Strand=Plus/Plus Query 29144 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 29203 ||| |||| |||||||||||||||| || || ||||||||||| | | ||| Sbjct 25257 GACGAGGTGACCGCAGCCTATGAGGCCGAGATTGCCGCGCTGGAGGCCGTCAAAGGCAAG 25316 Query 29204 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 29263 | ||||| || || |||||| ||||| |||||||||||||||| || || | Sbjct 25317 AAGTCCACGACTGCTGCCCAGAGCATCCAGTTGGACCAGAAGATCGCTGACGCGCGCGCA 25376 Query 29264 AACATGGTCAAGGCGCAGAAGAAGGCAGACGCCGACCTGGAAGTCCT--CCAGCTCAACG 29321 ||||||||||||||||| |||| ||| | | || || || | ||| ||||| Sbjct 25377 GGGATGGTCAAGGCGCAGAAAGAGGCCGACAACCAGCTTGAGGTGTTGGCCA--CCAACG 25434 Query 29322 AACAGGGGCGCCTGAAGAAACAGGCCCAGGCAGTCAAGGCCTACAGCGATGCGCTCCAGC 29381 | || |||||| || |||| | | || ||| ||||| | || || | Sbjct 25435 AGACCGGACGCCTGGCCAAGCAGGAACGGTCAATCACCACCTACGTGCAGGCCCTGGCTC 25494 Query 29382 AACAACAGGATGCGCTGGCCCTCCAGGGTCAACGTGCCGCCGCTGCCGTGGGCATGGGCG 29441 | |||||| || |||| || || ||||| || | || ||||||| ||| | Sbjct 25495 AGCAACAGCGAGCCCTGGAACTTGCCGGCCAACGCGCAGTACTTGGCGTGGGCCAGGGGG 25554 Query 29442 --CGCAACAGCGC-CGCTTGTTCGATCAGCGTGGCAGCCTTGACGACCGATTCGCACAGC 29498 ||| | | ||| | | ||| | | ||||| | ||||| || || |||| Sbjct 25555 ACCGCCAGAACGCACTCAACGGCGAACTG---AACAGCCAGCAAGACCGGTTTGCTCAGC 25611 Query 29499 AGCGCCTGGACCTGGCGAGCCAGTACGGCGACGGCTCGCGTGGCATGAGCCTCGACGAGT 29558 || ||||| |||| | |||| | |||| ||||| |||| || |||| Sbjct 25612 AGTCGCTGGAGTTGGCCAACCAGAAATCCGACCCGTCGCGCAACATGTCGGAGGAGGAGT 25671 Query 29559 ACAA-CGACAAGCTGCAGAAGC-TGCAG--GCGAACCACGCGGCGATGACCGAGCAGCTC 29614 ||| ||| || | ||| || ||||| |||||| | || || || || ||| || Sbjct 25672 TCAAGCGAAAATC-CCAGGCGCTTGCAGATGCGAACAAGGCCGC---CACTGACCAGATC 25727 Query 29615 CAACGCAACTACGCGGCCTTGCAGATCGCGCAGGCAGACTGGACCAACGGTGCCCGCTCG 29674 | | ||||| |||| || ||| ||| |||| |||||||| || || || ||| Sbjct 25728 CGGCAGAACTATGCGGATGTGGAGAACGCACAGGGCGACTGGACGAAGGGCGCGACGTCG 25787 Query 29675 GCGTTCGCCGACTATCTCGACTCGGCCAGGAACGTCGCGGGCCAGACCTACGACCTGTTC 29734 || | ||| |||| || || ||||| | |||| | || ||||||||| | ||||||| Sbjct 25788 GCCTGGGCCAACTACCTGGATTCGGCGAAGAACATTGCCGGCCAGACCAAAAGCCTGTTC 25847 Query 29735 AGCAACGC 29742 |||| || Sbjct 25848 GGCAATGC 25855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126560477589570