Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq846 686 0.0 seq406 354 3e-93 seq4950 241 5e-59 seq4719 127 8e-25 >seq846 Length=12855 Score = 686 bits (760), Expect = 0.0 Identities = 560/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Plus Query 11622 CCATTGTTCTCCAAATACAAAACCAATTTCTGCCAGTGCTTCGTCCATTTTGTCGATGAA 11681 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 3700 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 3759 Query 11682 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 11741 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 3760 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 3819 Query 11742 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 11801 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 3820 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 3879 Query 11802 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 11861 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 3880 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 3939 Query 11862 GCCAAGCCGGAACTTCATGAAGTCGCGGGAAGTAAAGGGGCATTTAAGCTCAAGACCGTT 11921 || |||||||| |||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 3940 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 3999 Query 11922 ACCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 11981 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | || Sbjct 4000 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 4059 Query 11982 TATGGGTGTTTCCGAGACGGTAACATCCGCGATAAATTCAAAGAGGGCACGGGCATCATC 12041 || || | ||| | || | || | | |||| ||||| ||||| | ||| || | Sbjct 4060 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 4119 Query 12042 TTCATATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 12101 || || || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 4120 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 4179 Query 12102 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 12161 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 4180 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 4239 Query 12162 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 12221 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 4240 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 4299 Query 12222 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 12280 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 4300 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 4358 Query 12281 TAATTTCTGGTGTCATG 12297 |||| || ||||||||| Sbjct 4359 TAATGTCCGGTGTCATG 4375 >seq406 Length=38937 Score = 354 bits (392), Expect = 3e-93 Identities = 395/524 (75%), Gaps = 5/524 (1%) Strand=Plus/Minus Query 3099 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3158 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 37201 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 37142 Query 3159 GGGGAACATCGCCAAGAAGTTGCACAAGTTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3218 | || ||||||||||| | ||||| || || |||| || ||||||||||| |||| Sbjct 37141 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 37082 Query 3219 GATCAAGGCGTGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3277 || ||||| || || |||| ||| |||| || |||| ||||| | ||||| Sbjct 37081 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 37023 Query 3278 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3337 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 37022 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 36963 Query 3338 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3397 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 36962 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 36906 Query 3398 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3457 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 36905 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 36846 Query 3458 CACCACATAGCCAACAGGCAATTCTCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3517 ||||||||||||| |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 36845 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 36786 Query 3518 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3577 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 36785 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 36726 Query 3578 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3621 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 36725 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 36682 >seq4950 Length=777 Score = 241 bits (266), Expect = 5e-59 Identities = 219/274 (80%), Gaps = 3/274 (1%) Strand=Plus/Minus Query 31696 AACCATTACCGTGACAACGCGCTCACCTACAAAGCGCAGCGAGATAAAAAAGTCAGAGAG 31755 || ||||||||||| ||||| | ||||||||||| ||||| || ||||| | |||||| Sbjct 275 AATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAA 216 Query 31756 CTGGAGCTGGCAAACGCAACCATTACTGATATGCAGGTGCGCCAGCGTGATGTTGCTGCG 31815 ||| ||||||| ||||| | |||||||| |||||| |||||||||||||||||||||| Sbjct 215 CTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCA 156 Query 31816 CTTGATGCTAAATACTCGAGGGAATTAGCCGATGCGAGAGCTGAAAATGAAACTCTGCGT 31875 || |||| |||||| ||| ||| ||||| |||||| |||||||||||| |||||||| Sbjct 155 CTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGT 96 Query 31876 GCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGCTCAACGCCACCTGCCCCGGTACCGTG 31935 | || |||||||||||||||| || ||| |||| || ||| | || | ||| Sbjct 95 GATGGTGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTG--TCAGT-CAGTG 39 Query 31936 CGTGAAGCCACCGGCACCTCCGGCGTGGGCAATG 31969 |||||||||||| | |||||||||||| |||| Sbjct 38 CGTGAAGCCACCACCGCCTCCGGCGTGGATAATG 5 >seq4719 Length=950 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Minus Query 33142 TGCGCCGCATCGTCGCCGTATTCCCGCATTAACAGAGACCGCAGCC--ACC-----TTA- 33193 ||||| | ||||||||||||||||||||||||| ||||| |||| || || Sbjct 320 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 261 Query 33194 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 33252 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 260 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 202 Query 33253 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACCGG 33311 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||||| Sbjct 201 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACCGG 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200973102278564