Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq4950 627 2e-175 seq962 140 9e-29 seq1730 109 1e-19 seq846 86.0 2e-12 >seq4950 Length=777 Score = 627 bits (694), Expect = 2e-175 Identities = 403/440 (92%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 38368 CATCTGTATTAATCACAGGCCCTAGTGGTAACGATGGTCTGGAAGGTGTGAGGTATAAAC 38427 |||| || |||||||| ||||| |||||||||||||||||||||||||| || || | || Sbjct 777 CATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC 718 Query 38428 CCTACAAAGACATCGTTGGTGTATGGACAGTGTGTTACGGGCATACAGGCAAAGACATCA 38487 | |||||||| || |||||||||||||| || ||| ||||||||||||| |||||||||| Sbjct 717 CATACAAAGATATTGTTGGTGTATGGACTGTATGTCACGGGCATACAGGAAAAGACATCA 658 Query 38488 TACCCGGTAAAACGTATACCGAGGCAGAATGCAAATCCCTCCTGAATAAAGACCTCGCTA 38547 | | |||||||||||||||| | |||||||||||| ||||||||||||||||||| || | Sbjct 657 TGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 598 Query 38548 CTGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATATACCGGAAACAACGCGCGGCG 38607 | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 597 CGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATATACCGGAAACAACGCGCGGCG 538 Query 38608 CCCTTTACTCGTTCGTCTACAACGTTGGATCTGGCAATTTCAGAACATCGACGCTTCTTC 38667 | |||||||||||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct 537 CTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTC 478 Query 38668 GCAAAATAAACCAGGGCGATATCAAAGGTGCATGTGATCAGCTACGTCGCTGGACATACG 38727 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 477 GCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATG 418 Query 38728 CTGGCGGTAAGCAATGGAAAGGCCTGATGACTCGCCGTGAGATTGAGCGTGAAGTCTGTT 38787 |||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||| Sbjct 417 CTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTT 358 Query 38788 TGTGGGGGCAGCAATGAACA 38807 ||||||| |||||||||||| Sbjct 357 TGTGGGGTCAGCAATGAACA 338 Score = 334 bits (370), Expect = 2e-87 Identities = 217/238 (91%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 38903 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGTCTGTCATGGGCTGTTA 38962 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 334 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTA 275 Query 38963 ATCATTACCGTGATAACGCCATTACCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAAC 39022 ||||||||||||||||||||||||||||||||| |||||||| ||||| | ||| |||| Sbjct 274 ATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAAC 215 Query 39023 TGAAGCAGGCGACCGCCACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGATGCAC 39082 |||||| ||||| ||| | ||||||||||||||| |||||||||||||| || ||||| Sbjct 214 TGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCAC 155 Query 39083 TTGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 39140 | |||| ||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 154 TGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 97 >seq962 Length=20954 Score = 140 bits (154), Expect = 9e-29 Identities = 345/513 (67%), Gaps = 14/513 (3%) Strand=Plus/Minus Query 39553 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 39612 ||||||||||| | |||||||| | ||||||||| |||||||| ||||||||||||||| Sbjct 870 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 811 Query 39613 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 39672 ||||| || || || | ||| ||| | |||| ||| | ||| || | || | | | | Sbjct 810 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 751 Query 39673 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCAC--CCCGACGGGCTTACCAC 39730 | ||||| ||||| || || ||||| |||||||| || |||| |||| ||||| Sbjct 750 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCG--CGGCTGACCAC 693 Query 39731 GGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGT-CCGGCGAGAAC-GA 39788 | || | ||||| ||| || | | | || || || |||| | || Sbjct 692 GCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTGA 635 Query 39789 CATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCA 39848 || | |||||| | | | || || || || | || || || || || ||| Sbjct 634 CAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACCA 575 Query 39849 GCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCAC 39908 ||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| ||| Sbjct 574 GCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCAC 515 Query 39909 GGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTAT 39967 |||||||| || |||| | || | || ||| |||||| |||| | || ||| | Sbjct 514 AGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTGT 456 Query 39968 ACCG--GTAAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGC 40025 || | || ||| ||||||| ||| ||| ||| | |||||| || | || || Sbjct 455 ACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGGC 398 Query 40026 AAGCCAGCGCCCCATCTGGTAGCCTCTCTGGGT 40058 | | | || | |||| || ||| | ||||| Sbjct 397 ACGGTAACGGCTCATCGGGACGCCGTTTTGGGT 365 Score = 140 bits (154), Expect = 9e-29 Identities = 345/513 (67%), Gaps = 14/513 (3%) Strand=Plus/Minus Query 16928 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 16987 ||||||||||| | |||||||| | ||||||||| |||||||| ||||||||||||||| Sbjct 870 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 811 Query 16988 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 17047 ||||| || || || | ||| ||| | |||| ||| | ||| || | || | | | | Sbjct 810 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 751 Query 17048 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCAC--CCCGACGGGCTTACCAC 17105 | ||||| ||||| || || ||||| |||||||| || |||| |||| ||||| Sbjct 750 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCG--CGGCTGACCAC 693 Query 17106 GGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGT-CCGGCGAGAAC-GA 17163 | || | ||||| ||| || | | | || || || |||| | || Sbjct 692 GCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTGA 635 Query 17164 CATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCA 17223 || | |||||| | | | || || || || | || || || || || ||| Sbjct 634 CAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACCA 575 Query 17224 GCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCAC 17283 ||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| ||| Sbjct 574 GCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCAC 515 Query 17284 GGCGAACTGCCGTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTAT 17342 |||||||| || |||| | || | || ||| |||||| |||| | || ||| | Sbjct 514 AGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTGT 456 Query 17343 ACCG--GTAAGTCGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGTCTGCCAGC 17400 || | || ||| ||||||| ||| ||| ||| | |||||| || | || || Sbjct 455 ACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGGC 398 Query 17401 AAGCCAGCGCCCCATCTGGTAGCCTCTCTGGGT 17433 | | | || | |||| || ||| | ||||| Sbjct 397 ACGGTAACGGCTCATCGGGACGCCGTTTTGGGT 365 >seq1730 Length=17063 Score = 109 bits (120), Expect = 1e-19 Identities = 242/361 (67%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 16916 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 16975 || || ||||| || | ||| || ||||| || | || | ||||||||| || | Sbjct 12812 TAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGAG 12871 Query 16976 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 17035 |||||||||||||| || || |||||||| ||||| ||||||||| | ||| || | Sbjct 12872 TTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCGC 12931 Query 17036 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 17095 ||||||||| | | ||| || || || ||||| |||||| || ||| |||| Sbjct 12932 TGCCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCACCTGCTGT 12991 Query 17096 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 17155 ||||| || || || | ||||| || || || || || ||| | |||||| Sbjct 12992 GGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCCGGC 13051 Query 17156 GAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGG 17215 || | |||||||| | | | | | |||| || || || ||||| ||| Sbjct 13052 TTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCCAGG 13111 Query 17216 TACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTG 17273 || |||||| ||| || |||||| ||||| | ||| |||||||| ||| | || | Sbjct 13112 TAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGTTCG 13169 Query 17274 G 17274 | Sbjct 13170 G 13170 Score = 109 bits (120), Expect = 1e-19 Identities = 242/361 (67%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 39541 TAGCCCGTCGCCGGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTG 39600 || || ||||| || | ||| || ||||| || | || | ||||||||| || | Sbjct 12812 TAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGAG 12871 Query 39601 TTATCCCAGCAGTTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAAC 39660 |||||||||||||| || || |||||||| ||||| ||||||||| | ||| || | Sbjct 12872 TTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCGC 12931 Query 39661 TGCCGGAACTGCCTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACG 39720 ||||||||| | | ||| || || || ||||| |||||| || ||| |||| Sbjct 12932 TGCCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCACCTGCTGT 12991 Query 39721 GGCTTACCACGGGTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGC 39780 ||||| || || || | ||||| || || || || || ||| | |||||| Sbjct 12992 GGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCCGGC 13051 Query 39781 GAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGG 39840 || | |||||||| | | | | | |||| || || || ||||| ||| Sbjct 13052 TTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCCAGG 13111 Query 39841 TACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTG 39898 || |||||| ||| || |||||| ||||| | ||| |||||||| ||| | || | Sbjct 13112 TAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGTTCG 13169 Query 39899 G 39899 | Sbjct 13170 G 13170 >seq846 Length=12855 Score = 86.0 bits (94), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 4/78 (5%) Strand=Plus/Plus Query 22734 CTCCATAAAACAAAACCCGTCGTAGCGAGTTCAGACAAAATAAATCCCCGCGAGTACGAG 22793 ||||||||||||||||||| ||||||||||||||| |||| |||||| || ||| |||| Sbjct 1691 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 1750 Query 22794 GATG----TTATTGCTGC 22807 |||| | |||||||| Sbjct 1751 GATGCTGTTCATTGCTGC 1768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132143792806200