Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028701.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq353 129 1e-25 seq98 107 4e-19 >seq353 Length=102661 Score = 129 bits (142), Expect = 1e-25 Identities = 321/482 (67%), Gaps = 8/482 (2%) Strand=Plus/Plus Query 282 CCCAGCCAGTCGTTTAACTCTTTCAGGCTTTCTTGTATCGGGGCCAGTTCGTTGATGGAA 341 |||||||| ||||| | || ||| || | || | ||| |||| ||||||| | Sbjct 44968 CCCAGCCACTCGTTGACCTGGGCCAGCCTCGCCTGCAACGGCTCCAGCTCGTTGACCGCC 45027 Query 342 AACACCTTCGCCGCTTTCT-CTACGTCGCCGAAGCCACCGGAGTTATTCGGCATTACCCC 400 | |||| || || | | | ||| | || || || || | ||| | ||||| | || Sbjct 45028 CAAACCTCAGCAGCCTCCCGCAACGAC-CCAAAACCGCCCGCGTTCTGCGGCACGATGCC 45086 Query 401 CATCAGAACGGGCGGCACACGGTGCGCGGCTAACAGGTCGTCGCGGGTGGCGTCTTTGAT 460 ||||| || || | || ||| || | ||| ||||| ||| || || |||||| Sbjct 45087 CATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAGATCGTCACGGCTGATGTTTTTGAT 45146 Query 461 GCCGGTAAACTCATCCTTCGCCGCCACCTGGCTGAACGGCATAATTTGCAGGCCGTCTTT 520 | | || || ||||| ||||| |||| ||| | ||| || | || | ||||||||| Sbjct 45147 CGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCACCGGGATGAGCTGAATGCCGTCTTT 45206 Query 521 TTTCCCGCCCGCCGCGTAGACAAACAGGTTTTTAAAAGCACCGTTGCC---GCGAGCATC 577 || || ||| |||||| ||||||||| || |||| | | ||| |||| | Sbjct 45207 CTTGCCTGCCGGCGCGTACACAAACAGG-TTGCGAAAGTTGCCTGGCCCTTTCGAG--TT 45263 Query 578 TTTCAGCGACTTTTTAAGCTTTTCCACATCGTTATTATTCGCCACCGGGTCAGTGAGGTA 637 ||||| | | || || | || | | ||| | ||| ||| || | ||| Sbjct 45264 CTTCAGTGCGGTGCGCAGTGAGTCGATGTCCTCTTCCTTCTGCGCCGCGTCGGTCATGTA 45323 Query 638 GACGATCACACCCGCATGACTGCCGTTAATGTAGTAGTTGCGGCGGAACACCGTTGCTTC 697 | || | ||| ||||| |||||||| ||||||| ||||| ||||||| ||| || Sbjct 45324 CAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGTACTTGCGCCGGAACAGCGTGGCGCT 45383 Query 698 ACCGTTCAGCATGGCGCTTTGTAGCGCGGCCAGATATTCCGGCGCGCCGTAGATCTCCTG 757 |||| |||| |||||||| ||||| ||||| | |||||| ||||||||| ||||| Sbjct 45384 CTCGTTGAGCAGTGCGCTTTGCAGCGCTGCCAGCCACTCCGGCAGGCCGTAGATTTCCTG 45443 Query 758 GT 759 || Sbjct 45444 GT 45445 >seq98 Length=166217 Score = 107 bits (118), Expect = 4e-19 Identities = 325/500 (65%), Gaps = 9/500 (2%) Strand=Plus/Plus Query 19575 CTGGATCAGGCTGAGATTTTCCAGCGGTGGAACCGGCGTATAGTCGTAATTAATGGTCAG 19634 |||| |||| || ||||||||||| || ||||| || |||||| | | |||| ||| Sbjct 122705 CTGGTTCAGCAGCAGGTTTTCCAGCGGCGGCACCGGGGTGTAGTCGAAGTCGATGGCCAG 122764 Query 19635 TTGACCATTGCGCAGGTTTTCCGTGGT---GTTCGGTTCAGGGTCGTACCAGCAGCGGGC 19691 ||||| || ||| | ||||| ||| | | |||||||||| ||| Sbjct 122765 GCGACCACTGGACAGCTG---CGTGGGCAGGTTGGCGCCCTCGTCGTACCAGGCCGTGGC 122821 Query 19692 GCCCAGCAGTTTGCCTTCCGTCACATAAGCGGTCAGCTTCTTGTTGATGCCGTCCACGAT 19751 || ||||| | || | |||| || | ||| ||||||||| || | || Sbjct 122822 CCCGAGCAGGTATCCGGCGTTCACCAGCTCGCGGAACTTGGCGTTGATGCCTTCGAGCAT 122881 Query 19752 GTCCTTAACCAGCGACGGGGTAAGCGGTTTATCAACATAGTAGAAGTGGGCTTCAGCGAC 19811 ||| |||||||| ||| ||||| || || || ||| || || || || |||| Sbjct 122882 GTCGCGCACCAGCGAGGGGTGCAGCGGCTTGTCGACGTAGACCAACTGCGCCTCGGCGAT 122941 Query 19812 GGTATCAGCAACGATCTGCGCGGTTCGGGTATAACTTTCGAAGATGTAC---GTTTCCTT 19868 ||| || || | ||||||||| || ||||| | | |||||| || | || | Sbjct 122942 GGTGTCGGCCAGGATCTGCGCCGTGCGGGTGGAGGTCTCGAAGGCAAACAGCGGCTCATC 123001 Query 19869 GTCGCAGGTACGCGATCCCCAGATGCGGTAGCCGTCCTGCTTGATCAGCGTGGTAACGCC 19928 | |||||| ||||||||||||| ||| |||| |||||||||||||| | | Sbjct 123002 GCTGCAGGTGCGCGATCCCCAGAACTTGTACCCGTTGGAGTTGATCAGCGTGGTGATATC 123061 Query 19929 TGCCGCATTCAGTTCGTCAGCGTCGGTATCGGTGCCCTGCAACGTGAAATAGATGTCCCG 19988 || ||||| || | | |||||||| | | |||||| ||| || |||||| Sbjct 123062 GGCGGCATTGAGCATGCCGGCGTCGGTCGCCGGATCCTGCAGGTCCCAATGGACGTCCCG 123121 Query 19989 ATCCATCCCAAGCACGTTATTAACGGGCACGTTGGAAATGGTTTTATGCCAGCCCTGCGT 20048 || || |||| |||| ||||||||| | | ||||||||||| ||| Sbjct 123122 GCTGATGCCGGTCACGCCGGCTACGGCCACGTTGGACAGCGACTTATGCCAGCCTTGCTG 123181 Query 20049 TGCGTCGATTCTGGCGCGCA 20068 | ||||| ||||||||| Sbjct 123182 CTCATCGATCATGGCGCGCA 123201 Score = 105 bits (116), Expect = 1e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 368 GCCGAAGCCACCGGAGTTATTCGGCATTACCCCCATCAGAACGGGCGGCACACGGTGCGC 427 ||||||||||||| || | ||||| | || | ||| |||||||| || |||| Sbjct 137916 GCCGAAGCCACCGCTATTCTGCGGCACGATGCCAAGCAGCTGCGGCGGCACGCGCAGCGC 137857 Query 428 GGCTAACAGGTCGTCGCGGGTGGCGTCTTTGATGCCGGTAAACTCATCCTTCGCCGCCAC 487 || | || ||||||||| || || | |||||| || ||||||||||| |||||||| Sbjct 137856 CGCCAGCATGTCGTCGCGCGTCACGCCCTTGATGTTGGCGAACTCATCCTTGGCCGCCAC 137797 Query 488 CTGGCTGAACGGCATAATTTGCAGGCCGTCTTTTTTCCCGCCCGCCGCGTAGACAAACAG 547 || ||| | ||| || || ||||| |||||||| || ||| | || | || ||||| Sbjct 137796 CTCGCTCACCGGGATGATCTGCAGACCGTCTTTCTTGCCGTTGGGCGAATGCACGAACAG 137737 Query 548 GTT 550 ||| Sbjct 137736 GTT 137734 Score = 86.0 bits (94), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 1571 CGGGAAGAACTTGATCACCAGTTGATAAACTGCATCGCCGATCCCCGTGCCGTCGATAGC 1630 ||||||||||| | ||||| || || | ||| || || ||| ||||||| | Sbjct 136750 CGGGAAGAACTGGCGGACCAGCTGGGCCACACCGGTGCCCATGCCGGTGGCGTCGATCCC 136691 Query 1631 AATGT-GCTGCACGTTGTAGCGGGTGGTGATCTCTTTAATAAAATTGGCCTGCTCTTCGT 1689 |||| | || || |||||| ||||| || | ||||| ||||| || || Sbjct 136690 GATGTAGGTG-ACCCAGTAGCGCTGGGTGACCTTCTGGATAAACGCCGCCTGGTCAGCGA 136632 Query 1690 ACTCCATGCCGCGTAACTGGTGGCGCTCTACCACGCGGAACTTACCACCCGGCACGGCTG 1749 | |||||||| |||||||| ||||| | |||||||||||| ||||| ||||| | Sbjct 136631 AGTCCATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACTTGGG 136572 Query 1750 GCGGGGCCAGCACAACCAGCCCGGCGCTGTCGCC 1783 |||| |||| | || | |||||||||||||| Sbjct 136571 GCGGCGCCACAATCACGATGCCGGCGCTGTCGCC 136538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107094065109354