Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq1661 145 3e-30 seq36 131 6e-26 seq399 100 1e-16 >seq1661 Length=12788 Score = 145 bits (160), Expect = 3e-30 Identities = 322/478 (67%), Gaps = 10/478 (2%) Strand=Plus/Minus Query 32679 AAGGCGAAGCTCCTGATCGTGGACGAGTCCTCCATGGTGGACGAGCAGGTGGGAGAAGAC 32738 ||||| ||||| | |||| ||||||| ||| ||||||||||| ||| | || || Sbjct 8416 AAGGCCAAGCTGATCGTCGTCGACGAGTGCTCGATGGTGGACGAACAGCTCGGCCGCGAT 8357 Query 32739 CTGCTGTCCTTCGGGGTGCCGATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCCGTC 32798 || || |||||| || || || | ||||||||||| | ||||||||||||| | Sbjct 8356 CTCATGAGCTTCGGCACCCCCATTCTGGTGCTGGGCGACCCTGGCCAGCTGCCGCCCATA 8297 Query 32799 ATGGGGGCCGGGTTCTTCACCAAGCAGAAGGCCGACTTCCTCCTGACCGACATCCACCGA 32858 || | ||| ||||||||| | || || | || ||||| || | ||| |||||||| Sbjct 8296 TCCGGCGGCGGCTTCTTCACCGAACACGAGCCGGATTTCCTGCTCAGCGAAATCCACCGG 8237 Query 32859 CAGGCCCGCGACAACCCGATCATCGAGATGTCTCGCATCGTCCGCGAAGGCGGTGCCCT- 32917 ||||| ||||||||||||||| | || | | | ||| ||||| || ||| | Sbjct 8236 CAGGCGCGCGACAACCCGATCCTGCGCCTGGCGCTCGACGTGCGCGAGGGACGTGAATTC 8177 Query 32918 GTCCCTGGGTCG-CTACGGGGAGAGCGAGGTGGTGCGCATGGCTGACTTCCAGCGCGACT 32976 | | ||| || | ||| | | | |||| | || | || | || || Sbjct 8176 GGCTATGG--CGATTTCGGTGCGGCCAAGGTCATCTCCAAGAACGAGGTGACGCAGGATC 8119 Query 32977 GGGTGTTCCAGGCCGACCAGATCCTGGTCGGGAAGAACGACACCCGCCGTGCCTACAACC 33036 |||| || ||||| ||| | ||||| || | |||| ||||||||| ||| || | Sbjct 8118 TGGTGCTCGGCGCCGATCAGGTGCTGGTGGGTACGAACCGCACCCGCCGCCGCTATAATC 8059 Query 33037 GCCGCATCCGCGAGCTCCGAGG---AGCCGCTCAGGCGTACCCGCACCAGGGAGACAAGC 33093 ||| | ||||||||| ||| ||||| | | ||||| ||| ||||||| Sbjct 8058 AGCGCCTGCGCGAGCTCAAAGGTTTTTCCGCT---TCCTTTCCGCAGGCGGGCGACAAGC 8002 Query 33094 TGGTCTGCCTGCGGAACAACCACGACTCTGGCCTGCTGAACGGCTCGCTCTGGACGGT 33151 |||| |||||||| ||| | | | | || ||||| ||||||||||| |||| ||| Sbjct 8001 TGGTGTGCCTGCGCAACGATCCGGCCAAGGGGCTGCTCAACGGCTCGCTGTGGAAGGT 7944 >seq36 Length=362838 Score = 131 bits (144), Expect = 6e-26 Identities = 246/357 (69%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 5914 CAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCC 5973 |||||||| || | || || || || || ||||| | || || ||||| |||||| Sbjct 350017 CAGCGCCTGGTGCTGACGCGCCCGGCGGTCGAGGCCGGCGAACGCCTGGGCTTTCTGCCC 350076 Query 5974 GGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGGTGATCGAC 6033 ||| ||| ||||| | | |||||||| |||| || |||||| | |||| Sbjct 350077 GGCGACCTGGCGCAGAAGGTCGACCCCTACCTGCGCCCGCTGTACGACGCGCTCTACGAC 350136 Query 6034 CTGGTCGGCC-CGACGATGACGAAGCGCCTCCTCGAGTCGCG--CCAGCTGGAGGTCGCC 6090 ||| | ||| ||| || | | ||||||| |||| || ||| | ||| ||||| Sbjct 350137 CTGATGGGCTTCGA-GAAGGTGCAGCGCCTGTTCGAAAAGCAGACCATC--GAGATCGCC 350193 Query 6091 CCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCTGACGAGATG 6150 ||||||||||| ||||| ||||| || | ||| || | | | || || |||||| | Sbjct 350194 CCGCTGGCCTATATGCGTGGCCGCACCCTGAACCACGCCTTCGTCATCCTGGACGAGGCG 350253 Query 6151 CAGAACGCCACCCCGCGCCAGACCGCGCTGCTGGTGACCCGCCTGGGCTTCGGGACGAAG 6210 |||||| |||| ||| |||| | || | |||||||| | || || || | ||| Sbjct 350254 CAGAACACCACGCCGGAACAGATGAAGATGTTCCTGACCCGCATCGGTTTTGGCAGCAAG 350313 Query 6211 GCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGCCGCCCGGCAAGGGCAACGGC 6267 |||||| | | ||| |||||| | ||| |||||||||| |||| ||| || |||| Sbjct 350314 GCCGTCATCACCGGCGACCCGTCGCAGGTGGACCTGCCGCGCGGCCAGGACAGCGGC 350370 >seq399 Length=120904 Score = 100 bits (110), Expect = 1e-16 Identities = 289/436 (66%), Gaps = 18/436 (4%) Strand=Plus/Plus Query 5822 ACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCAT--CCA 5879 ||||| | | | || || |||||| || || || || ||||||| ||||||| | || Sbjct 49868 ACGACATCAACTTCGGCATCGGCCCTGCCGGTACCGGCAAGACCTACCTGGCCGTGGCCT 49927 Query 5880 CCACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGC 5939 | ||| | ||| |||||| || | || | | ||| || | | || || || Sbjct 49928 GCGCGGTCGATGCC--CTGGAGCGCGAGCAGGTGCGACGCATCCTGCTGGTGCGTCCGGC 49985 Query 5940 CGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACGAGAAGATGGCACC 5999 || || || | |||||||| ||||| |||||||| ||| | ||||||| | || Sbjct 49986 GGTGGAAGCCGGCGAGAAGCTGGGCTTTTTGCCCGGCGACCTGGCCCAGAAGATCGACCC 50045 Query 6000 CTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGCC-CGACGA--TGACGAA 6056 ||||| |||| | |||||| | ||| || ||||| ||| | || | || Sbjct 50046 GTACCTGCGCCCGCTCTACGACGCGCTCTACGAGATGCTCGGCTTCGAATACGTGGCCAA 50105 Query 6057 GCGCCTCCTCGAGTCGCGCCAGCTG---GAGGTCGCCCCGCTGGCCTACATGCGAGGCCG 6113 || | ||||| |||||| || ||| |||||||||||||||||||||| ||||| Sbjct 50106 GC---TGATCGAG---CGCCAGGTGATCGAGATCGCCCCGCTGGCCTACATGCGTGGCCG 50159 Query 6114 GACGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCACC-CCGCGCCAGA 6172 ||| | ||| ||| | |||| | ||||| | |||||| ||||| || | |||| Sbjct 50160 TACGCTGAACAACAGCTTCATCATTCTCGACGAAAGCCAGAACACCACCGTCGAG-CAGA 50218 Query 6173 CCGCGCTGCTGGTGACCCGCCTGGGCTTCGGGACGAAGGCCGTCCTGAACGGTGACCCGG 6232 | || | ||||||| | || ||||| | | ||||| | | ||| ||| Sbjct 50219 TGAAGATGTTCCTGACCCGGATCGGTTTCGGCTCCACCGCCGTGATCACCGGCGACGTCA 50278 Query 6233 CCCAGTGCGACCTGCC 6248 ||||| ||||||||| Sbjct 50279 CCCAGGTCGACCTGCC 50294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191464517228160