Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq3473 277 7e-70 seq90 104 9e-18 seq46 89.7 2e-13 seq2859 87.8 7e-13 >seq3473 Length=4258 Score = 277 bits (306), Expect = 7e-70 Identities = 751/1138 (66%), Gaps = 70/1138 (6%) Strand=Plus/Plus Query 54584 ACCGCCAGCATGCCGTTCGTGTATCCGCACGTCGCACTCATGCCCGACGCACATTTCGGC 54643 || ||| ||||||||||| | | |||||| | ||||| ||||| ||||| || ||||| Sbjct 1571 ACGGCCCGCATGCCGTTCATCCACCCGCACCTGGCACTGATGCCGGACGCGCACCTCGGC 1630 Query 54644 AAAGGCAGCTCGGTCGGCACAGTCATCCCCACCCAAGGCGCCGTCATCCCGGCCGCCGTC 54703 || || |||||||| | |||||||| || | ||||| ||||||| ||||||||| Sbjct 1631 AAGGGGGCGACGGTCGGCTCGGTCATCCCGACGCTCGGCGCGATCATCCCCGCCGCCGTC 1690 Query 54704 GGCGTCGACATCGGCTGCGGCATGATCGCAGCCCGCACCACCTACACCGCGCAAGACCTC 54763 |||||||||||||||||||| |||||||| | || ||| ||| || | Sbjct 1691 GGCGTCGACATCGGCTGCGGGATGATCGCCGTTCG-------TACGCCGTTCA------C 1737 Query 54764 GACGACCGCATGGCCGCCACCGGGCATGGGCTGGACACGCTGCGCGCCTCGATTGAATCC 54823 || || | | || | ||| | | |||| | | || || | ||| || | Sbjct 1738 GAGGAGC-----GACGTCGACGGTCGTCGGCTCGCCGACCTCCGGGAGCAGATCGAGCGC 1792 Query 54824 GCCATCCCCATGTCGGCCGGTGGATACAACAAACGGCTCGACCGGTACCCGTTCACCGCC 54883 ||||||||| |||||||||| | |||||| || ||| | | |||||| Sbjct 1793 GCCATCCCCCTGTCGGCCGGCCGGTACAAC--------CGCAAGGT-CGTGGCCACCGCG 1843 Query 54884 G---CGCGCATCGTCGAACTCGACCATCGCGCGTTCGAGCTGAA---CATCGACCTGACG 54937 | |||||||| ||| || || || | ||| |||| ||| | |||||| | || Sbjct 1844 GAACCGCGCATCACCGAGCTGGAGCAGCTCGC---CGAGAAGAACGGCTTCGACCCGGCG 1900 Query 54938 CACT-CGCC--GAAATGGCGCGAACAGCTCGGAACACTCGGCGGCGGCAACCATTTCATT 54994 || | |||| ||| ||||| ||| | || || ||||| |||||||| ||||| Sbjct 1901 CAGTACGCCGGGAACTGGCGTCTGCAGTTGGGCACGCTCGGTTCAGGCAACCACTTCATC 1960 Query 54995 GAACTGTGCCTCGACCAGCTCGACCGCGTCTGGCTGTTCCTGCATTCCGGGTCTCGTGGT 55054 || ||| |||| ||||||| || ||||||||||||||||| || || || || || Sbjct 1961 GAGGTGTCGGTCGATGAGCTCGATCGGGTCTGGCTGTTCCTGCACTCGGGCTCGCGAGGC 2020 Query 55055 GTCGGCAACAAGATCGCGCAGAAACACATCAAGGCCGCCCAGAACGCCT-GCGAGG---- 55109 ||||||||||||||||| | | |||||| | ||||||| || || |||||| Sbjct 2021 GTCGGCAACAAGATCGCCGGGCACCACATCGCCGTCGCCCAG--CGGCTGGCGAGGCAGT 2078 Query 55110 ---GCATCGAACTGCCGTCCAAGGATCTGGCGTACCTCACCGAAGGCACACCCCAATTCT 55166 | ||||| || || | || ||||| ||||| ||| |||||||| | ||| Sbjct 2079 GGTGGATCGACCTTCCCGACCCCGACCTGGCATACCTGGTCGAGGGCACACCGGAGTTCA 2138 Query 55167 ACGAGTACCTACGTGAACTGCATTGGGCGCAACGATTCGCG-TACTCGAACCGCGCCGAA 55225 | ||| | || || |||| ||||| || | |||||| | || |||||| | || Sbjct 2139 CCCGCTACATCCGGGAGCTGCGGTGGGCCCAGCACTTCGCGCTGCT-GAACCGGGAGGAG 2197 Query 55226 ATGATGGACCGGTTCGCGCGCGCA-TTCGCGAACTGGATCGGCACACCCGTCGACGACGT 55284 |||||||| || || || ||| | || | | |||| || || |||||||| Sbjct 2198 ATGATGGATCGCGTCATCCG-GCAGGTGTCGGAGTTCCTCGGAACCCCGGTCGACGA--- 2253 Query 55285 CTCAGCGTTCATCGCCGAAACCATCAACACCCACCACAACTACACCGAGCAGGAAGAACA 55344 ||| || ||||||| ||||||||||| ||||||| ||| | || Sbjct 2254 -ACAG-----------GAGCGCATCAACTGCCACCACAACTTCACCGAGTCGGAGAAGCA 2301 Query 55345 CGGCGGCCGGTTCGTGTGGCTCACCCGCAAAGGCGCCATCGACGCACACGAAGGTGTGCG 55404 | ||| | |||||| | | || || || |||||| | || ||| ||| | Sbjct 2302 CTACGGGAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTCGACC 2361 Query 55405 TGGCCTCATCCCCGGCAGCATGGGCACCTGCTCATACGTCGTCACCGGCAAAGGCAACCC 55464 |||||||||||||| ||||| ||| ||| ||||| || || ||| |||| Sbjct 2362 GGGCCTCATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGTGGAAGGGCTCGGCGACCC 2421 Query 55465 CGAAGGGTTGTGCTCAGCACCGCACGGCGCTGGCCGCCGCTACTCCCGCACGAAAGCCCG 55524 | | || ||| | |||||||| || || || ||||||||| || || || Sbjct 2422 GCAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCTCGGCGGCGCG 2481 Query 55525 GAAACTGTTCACCGCA-GACGATTTGGCGGACCGTATGCGCGGCATCGAATACCGGCACG 55583 | |||| |||| ||| | || || ||| |||||||| | ||| || Sbjct 2482 GCGGACCTTCA-CGCACGACCAGCTGCGAGAGGCGATGACGGGCATCGAGTTCCGTGACA 2540 Query 55584 GCGACGCGTGGATCGACGAAATCCCCGACGCGTACAAGCCGATCGACGTCGTCATGCACG 55643 ||| || | |||||||| ||||| | |||||||||||||||||| || ||| | Sbjct 2541 CCGATGCCTTCATCGACGAGATCCCGCAGGCGTACAAGCCGATCGACCAGGTGATGGCGG 2600 Query 55644 ACGCCGCCGAGCTGGTCACCGTCGACGCCGAGCTGCGGCAAATCCTGAACGTCAAGGG 55701 | ||||||| || || | || | ||||||||| ||| | ||||| ||||| Sbjct 2601 ATGCCGCCGGACTCGTATCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 2658 >seq90 Length=95466 Score = 104 bits (114), Expect = 9e-18 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 54623 ATGCCCGACGCACATTTCGGCAAAGGCAGCTCGGTCGGCACAGTCATCCCCACCCAAGGC 54682 |||||||||| || | ||||| ||| | | ||||| | || | |||||| ||| Sbjct 11497 ATGCCCGACGTGCACCTGGGCAAGGGCGCCACCATCGGCTCGGTGGTGCCCACCATCGGC 11556 Query 54683 GCCGTCATCCCGGCCGCCGTCGGCGTCGACATCGGCTGCGGCATGATCGCAGCCCGCACC 54742 || |||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct 11557 GCGATCATCCCGGCGGCCGTGGGCGTGGACATCGGCTGCGGCATGATCGCCACCCGCACC 11616 Query 54743 AC 54744 || Sbjct 11617 AC 11618 Score = 93.3 bits (102), Expect = 2e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 54594 TGCCGTTCGTGTATCCGCACGTCGCACTCATGCCCGACGCACATTTCGGCAAAGGCAGCT 54653 |||||||||| ||| || || | ||||| |||| || | |||||||| | Sbjct 70158 TGCCGTTCGTCGGCCCGTGGGTGGCGGTGATGCCGGACGTGCACGTAGGCAAAGGGGCCA 70099 Query 54654 CGGTCGGCACAGTCATCCCCACCCAAGGCGCCGTCATCCCGGCCGCCGTCGGCGTCGACA 54713 | || ||| | || ||||| |||| ||||| |||| |||||||| |||||||| |||| Sbjct 70098 CCGTGGGCTCGGTGATCCCTACCCGCGGCGCGATCATTCCGGCCGCGGTCGGCGTGGACA 70039 Query 54714 TCGGCTGCGGCATGATCGCAGCCCGCACCAC 54744 |||||||||||||| || | |||||||| Sbjct 70038 TCGGCTGCGGCATGGCGGCGGTGCGCACCAC 70008 >seq46 Length=239904 Score = 89.7 bits (98), Expect = 2e-13 Identities = 111/150 (74%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 54585 CCGCCAGCATGCCGTTCGTGTATCCGCACGTCGCACTCATGCCCGACGCACATTTCGGCA 54644 ||||| || |||| || | || |||| |||| |||||| |||| || | ||||| Sbjct 145170 CCGCCCGCCTGCCCATCATCTACAAGCACATCGCGGCCATGCCGGACGTGCACTACGGCA 145111 Query 54645 AAGGCAGCTCGGTCGGCACAGTCATCCCCACC--CAAGGCGCCGTCATCCCGGCCGCCGT 54702 || | |||| || | || || || ||| |||||| ||| |||||||||||||| Sbjct 145110 TCGGTGCCACGGTGGGTTCGGTGATTCCGACCATCAAGGC--CGTGATCCCGGCCGCCGT 145053 Query 54703 CGGCGTCGACATCGGCTGCGGCATGATCGC 54732 ||||| |||||||||||||||||||| || Sbjct 145052 GGGCGTGGACATCGGCTGCGGCATGATGGC 145023 >seq2859 Length=8594 Score = 87.8 bits (96), Expect = 7e-13 Identities = 58/63 (92%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 794 GGTAGCTCAATTCGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 853 |||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 3497 GGTAGCTCAATT-GGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGATTCCTG 3555 Query 854 CCC 856 || Sbjct 3556 TCC 3558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196689476396502