Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028869.1 Length=153714 Score E Sequences producing significant alignments: (Bits) Value seq3559 98.7 1e-15 seq9125 96.9 3e-15 seq340 93.3 4e-14 seq375 87.8 2e-12 seq29 87.8 2e-12 seq3096 84.2 2e-11 >seq3559 Length=12351 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 113798 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 113857 || |||||||||||||| | | || ||| ||||| | |||| ||| |||||| Sbjct 3516 GGGCCGGGCCGTGGCTCGGGTGCCGGGTCGATGGTCGCGTACGCGATGAAGATCACCGAC 3575 Query 113858 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGAC 113917 ||||||| || | ||| |||||| |||||||||||| ||||||| ||||| | | Sbjct 3576 CTCGACCCACTCGAACACGGCCTGATCTTCGAGCGCTTCCTCAACCCCGACCGTGTCTCC 3635 Query 113918 TTCCCCGACATCGACGTCGACTTC 113941 | |||||| |||||||||||||| Sbjct 3636 ATGCCCGACTTCGACGTCGACTTC 3659 >seq9125 Length=594 Score = 96.9 bits (106), Expect = 3e-15 Identities = 192/280 (69%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 150266 CGGCCTGCTGCAGCGCAAGGGCCTGATCGAGGACCCGCAGATTCTCATCGCGGCCACCGG 150325 ||| |||||||| |||||||| || || ||||||||||| ||| | | ||| Sbjct 29 CGGGCTGCTGCAACGCAAGGGATACGCGGATGATCCGCAGATTCTGTTCGGTGGTATCGG 88 Query 150326 TGATGCCAACAGCGATCGGGTGCCGCTGCAGGTCGGCCAGTTCGAGTCCGACAACCGCAT 150385 || ||| | ||||| |||||| || || ||||||||||||||||| | ||| || Sbjct 89 CGACGCCGATTCCGATCAGGTGCCACTACAAGTCGGCCAGTTCGAGTCGGGTAACGCGAT 148 Query 150386 CGACG-CCATGATCGAGGCCATGTACCTCGAAGGCTTCGGGGGCGGGCAGGCACACGAGA 150444 |||| || ||| | |||| | |||||| ||| ||| || || ||| || | Sbjct 149 GGACGAGCAGCTTCG-GACCATCTTCCTCGAGGGCAACGGTGGTGGACAGAAGTCGGAAA 207 Query 150445 CCTACGAGCTCGCGGCCTACTTCCTGGCCCGGCACACC--TACCTGGAGCCGTGGCACAA 150502 ||| || | || || || ||| |||| || |||||| ||| ||| | ||| | || Sbjct 208 GCTATGAATTGGCAGCATATTTCATGGCGCGCCACACCAGTAC--GGATGCCTGGGAGAA 265 Query 150503 GCAGGGTCGCAAGGCCTACGCCATCTTCATCGGCGACGAG 150542 || || | || | |||| | || |||||||||||||| Sbjct 266 GCGCGGAAGGAAAGGCTACCTCTTCATCATCGGCGACGAG 305 >seq340 Length=55687 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 113797 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 113856 |||||| |||||||| |||| | ||||||||||| ||| | || |||||| Sbjct 6316 CGGCCCCGGCCGTGGTTCCGGTGCCGGCTCGCTGGTGGCCTGGGCGCTGCAGATCACCGA 6375 Query 113857 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGC--CCC 113914 ||||||||||| |||| ||||| |||||||||| ||| ||||||| || ||| | Sbjct 6376 TCTCGACCCGATCCCGTACAACCTGCTGTTCGAGCGGTTCCTCAACCCCGAACGCGTGTC 6435 Query 113915 GACTTCCCCGACATCGACGTCGACTTC 113941 || | |||||| ||||| |||||||| Sbjct 6436 GA--TGCCCGACTTCGACATCGACTTC 6460 >seq375 Length=82088 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 113789 TGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGC 113848 |||| ||| ||||| ||||| || |||| || || |||||||| | |||| ||||| Sbjct 20612 TGCCCGTG-GGCCCCGGCCGGGGTTCCGGCGCCGGTTCGCTGGTGGCGTACGCGCTGGGC 20554 Query 113849 ATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGAC 113908 || ||| | ||||||||| |||||| || |||||||||||||| | || || || Sbjct 20553 ATTACCGACCTGGACCCGATCCGCTACGACTTGCTGTTCGAGCGCTTCCTGAATCCCGAG 20494 Query 113909 CGCCCCGACTTCCCCGACATCGACGTCGACTTC 113941 || | | | |||||| |||| |||||||| Sbjct 20493 CGGGTCTCCATGCCCGACTTCGATATCGACTTC 20461 >seq29 Length=97445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 90953 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGA 91012 ||||||||||| ||||| ||| |||||||| ||| ||||| || ||||||||||||| Sbjct 16047 ACGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGA 16106 Query 91013 ATCCTGTCACCCCGAC 91028 |||||||| ||||||| Sbjct 16107 ATCCTGTCTCCCCGAC 16122 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 90954 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGAA 91013 |||||||||| ||||| ||| |||||||| ||| ||||| || |||||||||||||| Sbjct 15833 CGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGAA 15892 Query 91014 TCCTGTCACCCCGAC 91028 ||||||| ||||||| Sbjct 15893 TCCTGTCTCCCCGAC 15907 >seq3096 Length=9392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 90953 ACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGTTGTCGCAGGTTCGA 91012 ||||||||| | ||| |||| || |||||| ||| ||||| ||| ||||||||||| | Sbjct 5388 ACGGGGTGTGGCGCAGCTTGGTAGCGCGCTTCGTTCGGGACGAAGAGGTCGCAGGTTCAA 5329 Query 91013 ATCCTGTCACCCCGAC 91028 |||||||||||||||| Sbjct 5328 ATCCTGTCACCCCGAC 5313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491693320344080