Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028876.1 Length=109800 Score E Sequences producing significant alignments: (Bits) Value seq8755 176 3e-39 seq5676 131 1e-25 seq1668 131 1e-25 seq355 123 2e-23 seq8759 114 9e-21 seq64 111 1e-19 seq4407 89.7 4e-13 seq59 89.7 4e-13 >seq8755 Length=560 Score = 176 bits (194), Expect = 3e-39 Identities = 212/286 (74%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 96499 GTTGACCGCCGCCTCAATCTCTCCGTCGGATACGAAAGCGCCCTGTATCCGGAT-GGCAC 96557 || ||| ||||| || || |||||| | ||| |||||||| || ||| | ||| Sbjct 299 GTCGACAACCGCCGAGATTTCCTCGTCGGTGATGAACGCGCCCTGCATACGGGTCGGCTT 240 Query 96558 CCCGCGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGC 96617 || ||| |||| ||||||||| | ||||||||||| || ||||||| |||||| ||| Sbjct 239 ACC-CGCGCCCATGGGCAGGAACAGGCCGTCACCCATACCGATGAGCTTCTCGGCGCCGG 181 Query 96618 CCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACG 96677 || || ||||| || || || || ||||| | || ||||||| || | || | Sbjct 180 GCTGATCGAGGATGACTCGCGAGTCCGTCAGTGAAGACGTCGCGAACGCCAGACGCGAAG 121 Query 96678 GCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGA 96737 ||||||||| ||||| ||||| ||||| || || ||||| || |||||||| ||||| | Sbjct 120 GCACGTTGGTCTTGATCAGGCCGGTGACGACGTCGACGGACGGGCGCTGCGTTGCCAGCA 61 Query 96738 CGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT 96783 | || || |||||||| || || || ||||| | ||||||||| || Sbjct 60 CCAGGTGGATACCGGCAGCACGGGCTTTCTGCGTGATGCGGACGAT 15 >seq5676 Length=789 Score = 131 bits (144), Expect = 1e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 96986 AGGTGGGGGATACCGTTGTACGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGT 97045 ||||| |||||||| | |||||| ||||| || |||||||| |||||||| | ||| | Sbjct 70 AGGTGCGGGATACCTTCGTACGGCGTGAGCTCGACCATCTTGGGGTCGATGAGGATCATC 129 Query 97046 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 97105 || || || | |||||| ||||| || || ||||||||||| | |||||| Sbjct 130 CGTACTTCTTCCGGCGTTGCTCGGGTGAGCAACGAGACGAGCATCGAGTTCACGAAGCTC 189 Query 97106 GACTTACCTGATCCGGTGGCGCCAGCCACCAGCAGGTGCGGCATTTTGGCCAGGTTC 97162 |||||||| || ||||||| || |||||||| || |||||||| || || |||||| Sbjct 190 GACTTACCGGAGCCGGTGGAACCTGCCACCAGGAGATGCGGCATCTTCGCGAGGTTC 246 >seq1668 Length=11891 Score = 131 bits (144), Expect = 1e-25 Identities = 234/338 (69%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 99024 GTTC-AGGTAGTAGGGCTTGTCGAGCATGATCGGGTCGACCTCCCCGGCCGGCACGAACT 99082 |||| |||||||| ||||||||||| ||| | ||||||||| | ||| |||||||||| Sbjct 3745 GTTCGAGGTAGTACGGCTTGTCGAGGGTGAGCAGGTCGACCTGCTCGGAGGGCACGAACT 3804 Query 99083 CTACGACGTCAATCACCTTGTTGGTTTCGCTGGGCAGCTCTGCCAAGTCCTCATTGGTCA 99142 | |||||||| ||| || | | | || ||| || | || | ||| || || |||| Sbjct 3805 CGACGACGTCGATCTCCCGGCTCTTCTCCGCGGGGAGGGCGGCGAGGTCGTCCTTCGTCA 3864 Query 99143 GTAGGGCGGTTTGCCCGTCGACCTCGAACACCTTGCCCAGATCGGCCGTGTG-GACCTGC 99201 | | | |||| || || ||| | || | | | | | |||| ||| | || | Sbjct 3865 GCACGACGGTCTGGCCTTCGTCGACGTAGGCGCGGTCGATGTCGG-CGTACGCCACGGTC 3923 Query 99202 TCACCGCAGCATTCACAGATCTTGTGATACTTGATCCGCCCGCCGTCCTGGACGTGCGCC 99261 || |||||| ||| ||| | ||||| ||| ||||||||||||| ||||| || Sbjct 3924 TCTCCGCAGACTTCGCAGGTGCGCTGATAGCGGATGCGCCCGCCGTCCTTCTCGTGCACC 3983 Query 99262 AGATGGCCCTTCAGGTCGTGCTCTTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACC 99321 |||| | || |||||| || ||||| || | ||||| ||| |||||||| || || Sbjct 3984 TGATGCAGCGGCACGTCGTGGTCCTCGGTCGCGGAGTACACCTTGACCGGCACATTCACG 4043 Query 99322 AACCCGAAGTTGACCGCGCCTGTCCACACCGCTCTCAT 99359 | |||||| | | ||||| |||| | || ||||| Sbjct 4044 AGCCCGAACGTCAGTGCGCCCTTCCAGATCGTCCTCAT 4081 >seq355 Length=98473 Score = 123 bits (136), Expect = 2e-23 Identities = 235/338 (70%), Gaps = 15/338 (4%) Strand=Plus/Minus Query 96522 CGTCGGATACGAAAGCGCCCTGTATCCGGAT-GGCACCCCGCGCCCCCACGGGCAGGAAT 96580 ||||||| ||||| ||||| || | ||||| |||| | | ||| ||| || | | Sbjct 86502 CGTCGGAGACGAACGCGCCGTGAACACGGATCGGCAAACTGGTGCCCGGCGG-CATGTAG 86444 Query 96581 AACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 96640 | | |||||| |||| || |||||||| ||||||| ||| | ||| |||| | Sbjct 86443 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAA 86384 Query 96641 TCGGT---GAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGG 96697 ||| | | || | ||| |||| | | | ||| | ||||| ||||| ||| Sbjct 86383 TCGATCTTGCTCGACACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGG 86327 Query 96698 CCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCG 96757 || |||| || ||||| || || ||||| ||||| |||| | || || ||||| || Sbjct 86326 CCGGTGATCACGTCCACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCC 86267 Query 96758 CGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCTTTCTTGTAGCCGCCCA 96815 ||||||||||||||||| ||| | || ||| | |||| | |||||| | || || Sbjct 86266 CGCGCCTTCTGGGCGATACGGGCGATCAGTT--CTTCGA---CCTTCTTGCCGACGATCA 86212 Query 96816 TCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATG 96853 |||| | ||| || | |||||||||||| ||||||||| Sbjct 86211 TCATCATGTCGGCAAATTCGTCGACCACCACCACGATG 86174 >seq8759 Length=471 Score = 114 bits (126), Expect = 9e-21 Identities = 148/202 (73%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 96658 GGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGA 96717 |||||| | || | |||||| ||||| | ||||| || || ||||| || || ||| Sbjct 14 GGCGAAGGCCAGTCGAGACGGGACGTTCGCCTTGATGAGTCCGGTGACGACGTCGACGCT 73 Query 96718 GGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCG 96777 |||||||| ||||| |||||||| || || |||| || ||||| ||| | |||||| Sbjct 74 CGGCCGCTGGGTCGCGAGGACGAGGTGGATGCCGGAGGCTCGCGCGAGCTGCGTGATGCG 133 Query 96778 GACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTC 96837 || || | |||| || || | | || | ||||||||||||| ||||| ||||| Sbjct 134 CACGATCGAGTCCTCCACGTCG--CGAGGGGC-GACCATCATGAGGTCGGCGAGCTCGTC 190 Query 96838 GACCACTACCACGATGTAGGGG 96859 |||||| |||| || ||| ||| Sbjct 191 GACCACGACCAGGAGGTACGGG 212 >seq64 Length=260832 Score = 111 bits (122), Expect = 1e-19 Identities = 140/188 (74%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 96676 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 96735 ||| | ||||| ||||| ||||| |||| || |||||| ||| || ||||||||||| Sbjct 1263 CGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGTTGCGTCGCCAG 1322 Query 96736 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCG 96793 || | ||| || ||||| || |||||||||||||| | |||| | || ||| | ||| Sbjct 1323 GATCAAATGGATGCCGGCCGCACGCGCCTTCTGGGCCAGGCGGGCGATCAGTT--CTTCG 1380 Query 96794 ACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATG 96853 | || |||||| | ||||||| ||||| || || ||||||| || ||||||||| Sbjct 1381 A--TC-TTCTTGCCCACCACCATCATCAGGTCGGCCAGCTCGTCGATGACCACCACGATG 1437 Query 96854 TAGGGGAG 96861 ||| || Sbjct 1438 GTGGGCAG 1445 >seq4407 Length=7959 Score = 89.7 bits (98), Expect = 4e-13 Identities = 188/279 (67%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 96877 GTGGCGCACGCCGGCTTCCTGCATCTGCCGGTACCGGTCATCCATCTCC---ACGGTGAG 96933 || |||||||||| | | ||||| ||||| ||||| ||||||||| ||||| Sbjct 276 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCTTGACGGT--- 220 Query 96934 CCACCGCAGCGTCTTAACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGG 96993 ||| ||||| || |||| | || ||||| || || ||| | || || || Sbjct 219 CCATTTCAGCGCTACGACGGCCTTCTTCGGATCGGTCACGACGGGCGTGAGCAGATGCGG 160 Query 96994 GATACCGTTGTACGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGTTTGACCCG 97053 || |||| || | ||||||| ||||||||| ||||||||||| || | | | Sbjct 159 AATGCCGTCATAGATCGACAGTTCCAGCATCTTCGGATCGATCATGATCAGGCGGCACTG 100 Query 97054 ATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTACC 97113 || || | ||||| |||| || | | ||| | ||||||| ||| ||||| Sbjct 99 TTCCGGGGTCATGCGGTAAAGCAGCGACAGGATCATGGTGTTGATGGCAACGGATTTACC 40 Query 97114 TGATCCGGTGGCGCCAGCCACCAGCAGGTGCGGCATTTT 97152 || ||||||| || || |||||||| |||||||| || Sbjct 39 CGAGCCGGTGGTACCTGCAACCAGCAGATGCGGCATCTT 1 >seq59 Length=142688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 96682 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 96741 ||||| ||||| ||||| |||| || ||||| || || ||||| || ||||||| || Sbjct 115936 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGACGGGCGCTGGGTGGCCAGGATCAG 115877 Query 96742 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 96801 || || ||||| || ||||||||||| || | || | ||| | |||| | || Sbjct 115876 GTGGATGCCGGCCGCACGCGCCTTCTGCGCCAAACGTGCGATGAGCTCTTCGA---CCTT 115820 Query 96802 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGGAG 96861 |||| | || |||||| | ||| |||| |||||||| | | ||||||| | || || Sbjct 115819 CTTGCCGACGATCATCATCATGTCGGCGAATTCGTCGATGAAGATCACGATGAACGGCAG 115760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351190993427967