Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028878.1 Length=76271 Score E Sequences producing significant alignments: (Bits) Value seq2070 98.7 5e-16 seq9023 82.4 4e-11 seq154 82.4 4e-11 >seq2070 Length=16073 Score = 98.7 bits (108), Expect = 5e-16 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 62880 GTAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTG 62938 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3192 GTAGCTCAGTTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAACTCCTG 3134 >seq9023 Length=490 Score = 82.4 bits (90), Expect = 4e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 66127 GTGCCCCCACAAGGGATCGAACCTTGGACCCGATGATTAAAAGTCACCTGCTCTACCAAC 66186 ||||||||| ||| |||||||| |||| | ||||||||||| ||||||||||| Sbjct 374 GTGCCCCCAGTAGGACTCGAACCTACGACCTGCGGATTAAAAGTCCGTAGCTCTACCAAC 433 Query 66187 TGAGCTATAGGGGCGCGG 66204 |||||||||||||||||| Sbjct 434 TGAGCTATAGGGGCGCGG 451 >seq154 Length=55709 Score = 82.4 bits (90), Expect = 4e-11 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 51154 GCTTGACCCGCACGTGGGTGTGATCTACGGCGACTCGATCACGCTTGAGC--GCGCCGAG 51211 ||| ||| ||||||| || ||||||||||||| || ||||| |||| | | |||| | Sbjct 9343 GCTGGACTCGCACGTCGGCCTGATCTACGGCGATTCCATCAC-CTTGGCCCGGGGCCG-G 9286 Query 51212 CGCATCACCGCGCGTATGGAGCGGCTGGGTTATGCGTCGTCCAACGTGGTGTTTGGGGTC 51271 ||| | ||| ||||| ||||| ||| || |||||| || | || | Sbjct 9285 GACATTCTGGTGCGGCTGGAGAAAAAGGGTTTTGCATCCGGCAACGTTGTCCTGGGCATA 9226 Query 51272 GGGTCGTTCACGTACCAGTACAACACCCGCGACACGTTCGGGTCCGCGATGAAAGCGACG 51331 || |||| || |||||||| || |||||||| || || | ||| |||| |||||| Sbjct 9225 GGCTCGTATACCTACCAGTATCTGACGCGCGACACCTTTGGCTGGGCGTTGAAGGCGACG 9166 Query 51332 TGGGCTGAGGTCGACGGCAAGGGCTACAACCTGCTTAAGAATCCGGTGACCGA 51384 | || || ||| ||||| ||| | | | ||| | ||| | || ||||| || Sbjct 9165 TACGCCGAAGTCAACGGCGAGGCCCAGGAACTGGTCAAGGACCCCGTGACGGA 9113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243911697333304