Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq98 293 5e-75 seq353 104 5e-18 >seq98 Length=166217 Score = 293 bits (324), Expect = 5e-75 Identities = 982/1499 (66%), Gaps = 37/1499 (2%) Strand=Plus/Plus Query 19595 AAAACCGGCGGTGACTTCAAGGAAATTGACCTGCTGGGACGTCAGATTGAACGACTGGCA 19654 || |||||||| |||||||| || || ||||||||| || ||| | || || | ||| Sbjct 135506 AAGACCGGCGGCGACTTCAAAGAGATCGACCTGCTGCATCGGCAGCTGGAGCGGCAGGCC 135565 Query 19655 CGGGTCAACCGCTAC-AGTCAGACCGGCAACGAGGCAGACCTTAATCCGAACGTCGCTAA 19713 || || | || ||| || | | ||||||||||| ||||| || || ||||| || Sbjct 135566 CGCATCCAGCGTTACCAGGGCGGC-GGCAACGAGGCGGACCTGAACCCAGCGGTCGCCAA 135624 Query 19714 CCGCAACAAAGGCGGGCGTCGCAAA----CCGAAAAAGAATTTTTTCAGTGACGAGGCCA 19769 ||||||| ||| || | | | ||| || ||| ||||| || |||| Sbjct 135625 CCGCAACGCTGGCC--CGAAGAAGAAGGCCCGCAA--GAACGAGTTCAGCGAAGAGGAAG 135680 Query 19770 TCGAAAAGCTGGAGCAGATTTTCTTTGAGCAGTCTTTCGAATATCAGTTGCACTGGTATC 19829 | ||| |||| ||| ||| | || || ||||| || ||| | ||||| | Sbjct 135681 TGGAACGGCTGCGCCAGGCGTTCCTCGACGGGTGCTTCGATTACCAGCGCGATTGGTACC 135740 Query 19830 GCGCCGGGCTTGAGCACCGCATCCGCGATATCCTGAAATCCCGCCAGATTGGCGCGACGT 19889 ||||||| |||| | | |||| ||||| || || || ||||| ||||| || | Sbjct 135741 GCGCCGGCAGCGAGC---GGACGCGCGTGATCCTCAAGTCGCGGCAGATCGGCGCCACCT 135797 Query 19890 TTTATTTTTCCCGCGAGGCGCTGCTGCGCGCCCTGAAAACCGGTCATAACCAGATTTTTC 19949 || ||| |||||||||||||| | ||| |||| | ||| | || ||||| || | Sbjct 135798 ACTACTTTGCCCGCGAGGCGCTGATCGACGCGCTGATCAGCGGCCGCAATCAGATCTTCC 135857 Query 19950 TGTCGGCCAGTAAAACGCAGGCGTATGTGTTCCGCGAATACATCATCGCCTT--TGCCCG 20007 || || || | |||||| | | |||| | ||||| | ||| ||| || Sbjct 135858 TGAGCGCATCCAAGAGTCAGGCGCACATCTTCCTGGGCTACATGCGTGGCTTCGTGCGCG 135917 Query 20008 -GCTGGTTGACGTTGACCTGACCGGTGACCCGATTGTCCTGGGCAATAACGGCGCAAAAC 20066 | || | ||| ||||| ||||| || || || ||||||| ||| |||||| | | Sbjct 135918 AGGTGCTGGACCGGGACCTCACCGGCGATCCCATCGTCCTGGCCAA---CGGCGCTGAGC 135974 Query 20067 TGATTTTTCTCGGCACCAACTCCAACACCGCACAGAGCCATAACGGCGACCTGTACGTCG 20126 || | ||||| ||||||||| | |||||| ||| || | |||| | | ||| ||| Sbjct 135975 TGTTCTTTCTGGGCACCAACGCACGCACCGCGCAGGGCTACCACGGGAATTTCTACTTCG 136034 Query 20127 ACGAGATTTTCTGGATCCCGAATTTTCAGGTA-CTGCGTAAGGTGGCATCAGGTATGGCC 20185 |||| | ||||||| || |||| | ||| ||||| || || ||||| Sbjct 136035 ACGAATTCTTCTGGA-CCTACGGCTTCAACCAGCTGAACAAGGTCGCCAGCGGCATGGCG 136093 Query 20186 TCACAGAGTCACCTGCGCTCGACCTATTTCTCCACCCCGTCCACGCTGGCGCACGACGCC 20245 || | | |||| |||||| ||| ||| || ||||| |||||||||| ||| Sbjct 136094 ATGCACAAGAAATGGCGCAAGACCTACTTCAGCACGCCTTCCACCATGGCGCACGAAGCC 136153 Query 20246 TACCCGTTCTGGTCGGGTGAACTGTTCAACCGGGGACGCGCCAGCGCCGCCGAACGCGTG 20305 ||| |||||| | || || | |||||| ||| | ||| | | | | | | | Sbjct 136154 TACGATTTCTGGACAGGCGAGCGCTTCAACAAGGG-CAAGCCGACCTCCCAGCAGGTATC 136212 Query 20306 GAAATCGACGTCAGTCATAACGCCCTTGCCGGAGGTCTTCTCTGTGCGGACGGCCAGTGG 20365 || |||| ||||| || | || | | | || | | ||| | ||||| ||| Sbjct 136213 GA--TCGATGTCAGCCACGGCCGGCTGGGCAGTGGCCGACGCTGCGAGGACGCTATCTGG 136270 Query 20366 CGGCAGATTGTCACCATTGAGGACGCCCTGAAAGGCGGCTGCACGCTGTTCGACATTGAG 20425 |||||||| ||||| | ||||| | | || ||| |||||||| | | Sbjct 136271 CGGCAGATCGTCACAGTGCTCGACGCGGCCGACCGAGGGTGCGATCTGTTCGATGTGGCC 136330 Query 20426 CAGCTCAAACGTGAAAACAGCGCCGACGATTTTAAAAACCTGTTCATGTGTGAATTTGTT 20485 |||| || || |||||||||| || || |||||| | ||||| || || || Sbjct 136331 GAGCTGCGGCGCGATTACAGCGCCGAGGAATTCGCCAACCTGCTGATGTGCGAGTTCGTG 136390 Query 20486 GACGACAAGGCGTCGGTGTTCCCGTTCGAGGA-GCTGCAACGTTGCATGGTCGACACGCT 20544 ||||||| || ||||||||| | || || |||||| | ||| ||| |||| ||| Sbjct 136391 GACGACAGCGCCAGCGTGTTCCCGCT-GACGATGCTGCAGCCGTGCCAGGTGGACA-GCT 136448 Query 20545 GGAAGAA-TGGGAAGACTA--TGCGCCGTTT-GCCGCAAATCCGTTCGGCTCCCGCCCGG 20600 || | | |||| | | | | ||| || ||| || | ||| |||| ||| Sbjct 136449 GGGTGGAGTGGGCCGGCGAGTTCAGCCCCTTCGCCATGCGCCCATATGGCGACCGCGCGG 136508 Query 20601 TATGGATTGGTTACGACCCGTCACACCGTGGCGACAGCGCCGGATGCGTGGTACTGGCAC 20660 | |||||||| ||||||||| | | |||||||||||||| |||| | |||| | Sbjct 136509 TGTGGATTGGGTACGACCCGGCCGAGACGGGCGACAGCGCCGGCATCGTGATTGTGGCGC 136568 Query 20661 CGCCGGTGGTGGCCGGTGGCAAATTCAGAATACTTGAGCGTCACCAGTGGAAAGGCATGG 20720 |||| ||| |||||||||| ||| | | || ||||||||||||| || ||||||| Sbjct 136569 CGCCCCAAGTGCCCGGTGGCAAGTTCCGCGTGCTGGAGCGTCACCAGTTCAAGGGCATGG 136628 Query 20721 ACTTTGCCACCCAGGCGGAATCCATCCGCAAACTCACCGAAAAATATAACGTTGAATACA 20780 |||| || |||||||| | |||| || ||||| | || || |||| Sbjct 136629 ACTTCGCTGACCAGGCGGCGTTTATCCAGAAGGTCACCCAGCGCTACTGGGTCACCTACA 136688 Query 20781 TCGGGATTGATGCCACCGGCCTCGGTGTCGGCGTGTTCCAGCTCGTGCGCTCGTTCTATC 20840 ||||||| || ||||||||| | || ||| ||| |||||| || ||| ||||| || Sbjct 136689 TCGGGATCGACGCCACCGGCATGGGCACCGGTGTGGCCCAGCTGGTCCGCCAGTTCT-TC 136747 Query 20841 CCGCCG-CGCGCGATATCCGCTACACGCCGGAAATGAAAACCGCAATGGTGCTCAAGGCA 20899 ||| | | | || ||||| |||| || |||| || ||||||||||||| Sbjct 136748 CCGGGGTTGACCACCTTCAGCTACTCGCCCGAGGTGAAGACGCGGCTGGTGCTCAAGGCG 136807 Query 20900 AAAGACGTTATCCGCCGTGGCTGTCTGGAATATGACGTCAGCGCCACCGACATCACCAGC 20959 || || ||| | ||||||||||||||| | || |||||||| ||| Sbjct 136808 TTCGATGTCATCAAGAACGAGCGTCTGGAATATGACGCCGGCTGGACCGACATGACCCAG 136867 Query 20960 TCGTTTATGGCTATCCGCAAGACCATGACCAGCAGCGGACG-CAGCGCCACCTATGAGGC 21018 ||| | | || |||| ||||||| || |||||| || ||| ||||||| ||| Sbjct 136868 TCGCTGCTTGCCATCCAGAAGACCAGCACGGCCAGCGGCCGACAG-ACCACCTACACGGC 136926 Query 21019 CAGCCGCAGCGAGGAAG-CCAGCCACGCCGATCTCGCCTGGGCGACTATGCACGCCCTG 21076 | ||| || | | | || ||||||||||||| || |||||| |||| |||||| Sbjct 136927 GGGGCGC-TCGCGCACGACCGGCCACGCCGATCTGGCGTGGGCGCTGCTGCATGCCCTG 136984 Score = 268 bits (296), Expect = 2e-67 Identities = 770/1161 (66%), Gaps = 59/1161 (5%) Strand=Plus/Plus Query 5583 TCGGTAATACGCTGGCGCAGGGTCAGGTTTTCGAGAGGAGGCACCGGGGTATAGTCATAG 5642 ||||| || |||||| ||| ||||||||| || || ||||||||||| ||||| || Sbjct 122694 TCGGTGATGCGCTGGTTCAGCAGCAGGTTTTCCAGCGGCGGCACCGGGGTGTAGTCGAAG 122753 Query 5643 TCGATATACAGTTTTCCGGCCTTGAGGGTTTCC---GCATCGTTGGATTCTTCGCTGAAC 5699 ||||| ||| || || || | | | ||| ||||| | ||| | || Sbjct 122754 TCGATGGCCAGGCGACCA--CTGGACAGCTGCGTGGGCAG-GTTGGCGCCCTCGTCGTAC 122810 Query 5700 CAGCAGGTCGCATCCACGATATAGCCGTTTGTTTTCAGCTCACGGAATTTGGCATTGATG 5759 ||| || || | | | || ||| | |||||| ||||| ||||| |||||| Sbjct 122811 CAGGCCGTGGCCCCGAGCAGGTATCCGGCGTTCACCAGCTCGCGGAACTTGGCGTTGATG 122870 Query 5760 CCGTCAACGATGTCGCGAATCAGCGTTGCGGTGATG-GGCTTGTCCACCGCCCACATATG 5818 || || | |||||||| | ||||| | |||| | |||||||| || || || Sbjct 122871 CCTTCGAGCATGTCGCGCACCAGCGAGG-GGTGCAGCGGCTTGTCGACGTAGACCAACTG 122929 Query 5819 CGCCTCAGCCATCGTGTCGGCCAGCACCTGCGCGGTGCGGGTGTAGTTTTCAAAGAGGAA 5878 |||||| || || ||||||||||| | |||||| ||||||||| || | || ||| || Sbjct 122930 CGCCTCGGCGATGGTGTCGGCCAGGATCTGCGCCGTGCGGGTGGAGGTCTCGAAGGCAAA 122989 Query 5879 CAGCGGGTCATCAGAGCAGGTACGGTTACCCCAGAATCGGAAACCGTCGCGGCGAATCAG 5938 |||||| ||||| |||||| || |||||||| | | |||| | | ||||| Sbjct 122990 CAGCGGCTCATCGCTGCAGGTGCGCGATCCCCAGAACTTGTACCCGTTGGAGTTGATCAG 123049 Query 5939 CGTAGTGACGCCTGACTCGTTAAGCAGGTCAGCATCGGT-GCCGGACTCCTGCAAATCCC 5997 ||| |||| | | | || |||| | | || ||||| |||||| ||||||| |||| Sbjct 123050 CGTGGTGATATCGGCGGCATTGAGCATGCCGGCGTCGGTCGCCGGA-TCCTGCAGGTCCC 123108 Query 5998 AGAATACAGATGC--GCTGATGCCGGTAACACCGTTTACCCCGACGTTGGACAGCGTTTT 6055 ||| | | | |||||||||||| || ||| ||| | ||||||||||||| || Sbjct 123109 --AATGGACGTCCCGGCTGATGCCGGTCACGCCGGCTACGGCCACGTTGGACAGCGACTT 123166 Query 6056 ATGCCAGCCCTGCTCCTGGTCGATTTTAGCGCGCAGACCCAGCGCACGGGCGGTGGCATA 6115 ||||||||| |||| || ||||| | |||||||| || |||||||| || || || | Sbjct 123167 ATGCCAGCCTTGCTGCTCATCGATCATGGCGCGCAGGCCGAGCGCACGTGCCGTTGCGAA 123226 Query 6116 CGCGGTGGCGGTGGTACTGTTGACCGTATCCCATGCGAGGAAATCCGGCCAGATGACCAT 6175 || || ||||||| | | | || | | || | ||| || || ||| | ||| Sbjct 123227 GGCCATGCCGGTGGTCGCATCGGCGGTGTTGAAGGCCACGAAGTCGGGATAGAGCAACAT 123286 Query 6176 CAGCTCACGCTGGCTGAAATTCTGGCGGTAGGCTTTCACCTCGGAA----ATGGTTTTAC 6231 |||||| || | |||||| | | |||||| || | |||||| | | | | | Sbjct 123287 CAGCTCGCGGTCGCTGAACTGCGCGCGGTAAGCGATGGCCTCGGGAACCGAGGCGCTGGC 123346 Query 6232 AGCCCCATGCGCTGATATACCCGAAAGCGCGCAACTTC-TGAC--ACACTGATGCCAGTG 6288 ||| | ||||| || | | || |||| |||| || | ||| ||||| | Sbjct 123347 AGCGC----AGCTGACGTAGGCCATGGCCCGCAGCTTCTTGGCGATCAC---GGCCAGGG 123399 Query 6289 CAACTGCCACCTCTTTGGTGTCCAGTCCCGGTACGCCGAGAATACGCGGTTTAACACCGG 6348 || | | |||| | ||||||||||||||| ||||||| || ||||| || ||| Sbjct 123400 CAGCGGTCACCGGCTGGGTGTCCAGTCCCGGCGCGCCGAGGATCCGCGGCCGTACCCCG- 123458 Query 6349 TTACC---GACTCCGCCGCCAGCAGGGCTTTCAGTCCGGTGTACTGACCGTTTTCGTCGG 6405 ||| | || | | ||||||| || | ||| |||||||| | || |||| Sbjct 123459 --ACCTGGGCTTCGGACACCAGCAGCGCCTGCAGGCCGGTGTA--GGTCG-CACCGTCCT 123513 Query 6406 TGGTGCCGATGATATTGGAAACGGTCTGCGCGAGTTTCGTTTCCTCGTCGTCGCCGGTGC 6465 | | || |||| ||||| |||| || || | |||||| | || Sbjct 123514 TCTTACCAATGACATTGG---CGGT-------GGTGGCGCT-----GTCGTCCAC---GC 123555 Query 6466 CGTCTTCCACACGCACAACAACGGTGACCGGTTTTGACTGGTCGGCGATGGCCTGCAACG 6525 | || |||| ||||| || || |||| | || | ||||||||| ||||||||||||| Sbjct 123556 CCTCGGCCACGCGCACCACGACCGTGATGGCGTTAGCCTGGTCGGCAATGGCCTGCAACG 123615 Query 6526 CTGCCGC-CAGCGTGCCTTTTTTACCGGCCTTTGCAATTGCGCTCTGCACATTGGTAATC 6584 || || ||| ||||| | || ||||| |||| || | | |||| | || | | Sbjct 123616 -TGGGGCGCAGGGTGCCGGCGGTGCCAGCCTTGCCAATAGCCCCCAGCACGTCAGTCAGC 123674 Query 6585 AGCACCGGTTTATTGAGGGGGAAGATTTCCGCATCCGCATCGCTGGCC-GTGCAGACCAA 6643 ||||||||| ||||| ||||| | || || ||||| || ||| ||||| || | Sbjct 123675 AGCACCGGTCGGTTGAGCGGGAACAGGGTGGCGTCGGCATC-CTCGCCGGTGCAAACAAT 123733 Query 6644 GCCGACAATGGCAGTGGATACGGTGGAAATGACGCGGGTGCCGTCGTTAATCTCCAGCAC 6703 ||||| | ||| |||| | ||| || |||| ||| |||| ||||| | || Sbjct 123734 GCCGATGACGGCGGTGGCGATGGTACGGATCGGGCGGACACCGCCGTTGATCTCGATGAC 123793 Query 6704 CTGCACGCCGTGATGATAGTC 6724 | |||||||| |||||||| Sbjct 123794 ACGTACGCCGTGGTGATAGTC 123814 Score = 86.0 bits (94), Expect = 1e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 21619 GTGTTTCACCTGCTGGAGCCGGATATCAATCAGGAGCTGTACGGCCTGCCGGAATATCTC 21678 |||| || |||| |||| | ||| | |||||| ||||||||||||| || | | Sbjct 137497 GTGTACCAGCTGCGGGAGTCCGATGCAGACCAGGAGGTGTACGGCCTGCCCGAGTGGATG 137556 Query 21679 AGCGCCCTTAACTCTGCCTGGCTGAATGAGTCGGCCACGCTGTTCCGCCGCAAGTATTAC 21738 ||| | | | || ||| || |||||||||||||||||||| |||||||| ||| Sbjct 137557 CCGGCCGTGCAGGCCGCGCTGCTCAACGAGTCGGCCACGCTGTTCCGGCGCAAGTACTAC 137616 Query 21739 GAAAACGGCGCTCATGCCGGATACATCATGTATGTCACCGATGCC 21783 | |||||| | || ||||| | |||| | || | |||||| || Sbjct 137617 AACAACGGCTCGCACGCCGGCTTCATCCTCTACCTGACCGATTCC 137661 >seq353 Length=102661 Score = 104 bits (114), Expect = 5e-18 Identities = 274/411 (67%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 21604 TTCGCGCCCGGCTCCGTGTTTCACCTGCTGGAGCCGGATATCAATCAGGAGCTGTACGGC 21663 || || ||||| || | | ||| ||| ||| | |||||||| ||||| | |||||| Sbjct 45488 TTTGCCCCCGGTTCGATCTGCCACTTGCGCGAGGCCGATATCAACCAGGAAATCTACGGC 45429 Query 21664 CTGCCGGAATATCT--CAGCGCCCTTAACTCTGCCTGGCTGAATGAGTCGGCCACGCTGT 21721 |||||||| | || |||||| || || ||| || ||| |||||||||| Sbjct 45428 CTGCCGGAGTGGCTGGCAGCGCTGCAAAGC--GCACTGCTCAACGAGAGCGCCACGCTGT 45371 Query 21722 TCCGCCGCAAGTATTACGAAAACGGCGCTCATGCCGGATACATCATGTATGTCACCGATG 21781 |||| |||||||| ||| | |||||| |||||||| | ||| |||| | ||||| | Sbjct 45370 TCCGGCGCAAGTACTACAACAACGGCAGCCATGCCGGTTTCATTCTGTACATGACCGACG 45311 Query 21782 CCGTGCAGGATCGCAACGATATCGAAATGCTTCGCGAAAACA-TGGTTAAGTCGAAAGGC 21840 | | |||| | | || ||||| || ||| | || || || |||||||| Sbjct 45310 CGGCGCAGAAGGAAGAGGACATCGACTCACTGCGC-ACCGCACTGAAGAACTCGAAAGGG 45252 Query 21841 CGCAACAACTTTAAAAACCTGTTTCTCTATGC-CCCACAGG--GGAAAGCCGACGGCATT 21897 | ||||||| ||||||||| | || || || |||| |||| ||||||||| Sbjct 45251 CCAGGCAACTTTCGCAACCTGTTTGTGTACGCGCCGGCAGGCAAGAAA---GACGGCATT 45195 Query 21898 AAAATTATCCCCCTCAGTGAAGTGGCGACGAAGGACGAtttttttAATATCAAAAAAGTC 21957 | | ||||| | || || || ||| | |||||||| || |||||||| || Sbjct 45194 CAGCTCATCCCGGTGAGCGAGGTTGCGGCCAAGGACGAATTCAGCTCGATCAAAAACATC 45135 Query 21958 AGCGCCGCAGATCTCCTGGACGCACACCGCATCCCCTTTCAGTTGATGGGC 22008 ||| | ||||| || | || ||||| || |||||||||||| Sbjct 45134 AGCCGTGACGATCTGCTCGCGGCGTTGCGCATTCCACCGCAGTTGATGGGC 45084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104425592392638