Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028925.1 Length=170822 Score E Sequences producing significant alignments: (Bits) Value seq3870 86.0 7e-12 >seq3870 Length=345 Score = 86.0 bits (94), Expect = 7e-12 Identities = 198/296 (67%), Gaps = 12/296 (4%) Strand=Plus/Minus Query 39785 ATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTGATATCATAGTTC 39844 ||||| |||||||| | |||||||| ||||| || || ||||| ||||| || |||||| Sbjct 301 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 242 Query 39845 GGGTCGTCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAAA 39901 || ||| |||| | | | || | ||| || || |||||| | || || ||||| Sbjct 241 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCAAACA---CCAGTTTCGGGAAC 185 Query 39902 ATAGGAGTTATTCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 39961 | | |||| | | | ||| || ||| ||||| || ||| || | || |||| Sbjct 184 ACCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATCGATTCCTGA 125 Query 39962 ATCATTCG---TTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTCACAAAAGGGGTC 40018 |||| || ||| |||| || ||| |||||| || || ||||| || ||| Sbjct 124 ATCAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTC 68 Query 40019 TGTCCGTTTGAACTAAAGAGAGTGTTTACTTCATATTCATAAGCTTGGAATGCATC 40074 || ||||| | | || ||||||||||| || || | ||||| ||||| Sbjct 67 TGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATC 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546431853371440