Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq3870 82.4 8e-11 >seq3870 Length=345 Score = 82.4 bits (90), Expect = 8e-11 Identities = 198/296 (67%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 113398 ATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGTTGCTTAATGTCGTAATTC 113457 ||||| |||||||| | |||||||||||||| || || || || || |||||||| ||| Sbjct 301 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 242 Query 113458 GGATCGTCTTTATAAAGATTAACGCCTTCTTCAA-CGAACATAACAAGCTTAGGGAAAAT 113516 |||||| |||| | | | || | || || || || | | || || || ||||| | Sbjct 241 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCA-AACACCAGTTTCGGGAACAC 183 Query 113517 AGGAGTTATTCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 113576 | |||| | | | ||| || ||| ||||| || ||| || | || |||||| Sbjct 182 CGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATCGATTCCTGAAT 123 Query 113577 CATTCG---TTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTTTG 113633 || || ||| |||| || ||| |||||| || |||||||| || || || Sbjct 122 CAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTG 66 Query 113634 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGT 113689 ||||| | | || || |||||||| || || | ||||| ||||||| Sbjct 65 ACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGT 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535156509065360