Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq3473 230 9e-56 seq90 87.8 7e-13 >seq3473 Length=4258 Score = 230 bits (254), Expect = 9e-56 Identities = 740/1142 (65%), Gaps = 30/1142 (3%) Strand=Plus/Plus Query 52696 GACGACGAGACTCTCGCCCAGGCGCAGCAGACGGCTGACATGCCGTTCGTGTACCCGCAC 52755 ||||| |||| ||||| |||||||| ||||| |||||||||| | |||||||| Sbjct 1541 GACGAGAAGACACTCGCTCAGGCGCACACCACGGCCCGCATGCCGTTCATCCACCCGCAC 1600 Query 52756 GTGGCGCTCATGCCTGACGCGCATTTCGGGAAGGGCAGCAGCGTCGGCACGGTGATCCCG 52815 |||| || ||||| |||||||| |||| ||||| | |||||| |||| |||||| Sbjct 1601 CTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGACGGTCGGCTCGGTCATCCCG 1660 Query 52816 ACCGAGGGTGNNNNNNNNNNNNNNNCGGTGGGTGTGGACATTGGTTGCGGCATGATCGCC 52875 || || | | || || || ||||| || ||||| ||||||||| Sbjct 1661 ACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACATCGGCTGCGGGATGATCGCC 1720 Query 52876 GCCCGCACGAGCTACACGGCGACGGACTTGGAGGGCCGCGAGCTTTCGGCGCTGCGCGAG 52935 | || ||| | |||| || ||| | || || || ||| | | || || ||| Sbjct 1721 GTTCGTACGCCGTTCACGAGGAGCGACGTCGACGGTCGTCGGCTCGCCGACCTCCGGGAG 1780 Query 52936 TCGATCGAGTCGGCGATCCCGATGAGCGCCGGGGGCTACAACAAGTCGCTGGACCGTTTC 52995 ||||||| || ||||| || ||||| | |||||| ||| | ||| | Sbjct 1781 CAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGTACAAC----CGCAAGGTCGTGGC 1836 Query 52996 GACTTCACCAGGTCGCGCCTGGACTGGCTGCAGTTGATCGCTACCCGGTTCGGTGTCGAC 53055 || | | ||||| | | |||| || | |||| | ||| ||||| Sbjct 1837 CACCGCGGAAC--CGCGCATCACCGAGCTGGAGCAGCTCGCCGAGAAGAACGGCTTCGAC 1894 Query 53056 CTGTCGCACT-CGCCG--AAGTGGCGTGAGCAGCTCGGCACGCTCGGCGGTGGCAATCAC 53112 | | |||| | ||||| || |||||| |||| | ||||||||||| ||||| ||| Sbjct 1895 CCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGTTGGGCACGCTCGGTTCAGGCAACCAC 1954 Query 53113 TTCATCGAGTTGTGTGTCGACCACCTTGACCGTGTGTGGTTGTTCCTGCACTCCGGTTCG 53172 ||||||||| ||| ||||| | || || || || ||| ||||||||||||| || ||| Sbjct 1955 TTCATCGAGGTGTCGGTCGATGAGCTCGATCGGGTCTGGCTGTTCCTGCACTCGGGCTCG 2014 Query 53173 CGTGGTGTAGGCAACAAGATCGCGCAGCGGCATATCGCTGCGGCGCAG-GGCTACTGCCA 53231 || || || |||||||||||||| || || ||||| | || ||| |||| | Sbjct 2015 CGAGGCGTCGGCAACAAGATCGCCGGGCACCACATCGCCGTCGCCCAGCGGCTGGCGAGG 2074 Query 53232 CAACAACGGCCTGCAGGTGCCTCACCCTGATCTGGCGTATCTCGTCGAGGGCACGCCCGA 53291 || || | | | || |||| || ||||| || || ||||||||||| || || Sbjct 2075 CAGTGGTGG-ATCGACCTTCCCGACCCCGACCTGGCATACCTGGTCGAGGGCACACCGGA 2133 Query 53292 GTTCGACTCG-TACATCGTCGAGTTGCGGTGGGCGCAGCGGTTCGCGTACCTGAACCGTG 53350 |||| || || |||||| ||| |||||||||| |||| |||||| |||||||| | Sbjct 2134 GTTC-ACCCGCTACATCCGGGAGCTGCGGTGGGCCCAGCACTTCGCGCTGCTGAACCGGG 2192 Query 53351 CCGAGATGCTGGATCGTTTCGCGCGGGCGTTCGCGCACTGGATGGGTTACCCGCCGGGTG 53410 |||||| ||||||| || ||| | | || | | | || ||| |||| | Sbjct 2193 AGGAGATGATGGATCGCGTCATCCGGCAGGTGTCGGAGTTCCTCGG-AACC--CCGGTCG 2249 Query 53411 ACGCCGATTCGCTGCTGGTGGAGACGATCAACACTCATCACAACTACACGCAGAAGGAAA 53470 ||| | |||| |||||| || ||||||| ||| || ||| | Sbjct 2250 ACGAACA------------GGAGCGCATCAACTGCCACCACAACTTCACCGAGTCGGAGA 2297 Query 53471 CTCACGGCGGCCGTGAGGTGTGGTTGACCCGCAAGGGTGCGATCGACGCGAACAAGGGGG 53530 ||| ||| |||||||| || | || ||||| || ||| | ||| || || Sbjct 2298 AGCACTACGGGAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTC 2357 Query 53531 TGCGGGGGCTGATTCCCGGCAGCATGGGCACCCGCTCGTATGTCGTCACCGGCAAGGGCA 53590 | ||| || || ||||| ||||| ||| ||| || || || || ||| Sbjct 2358 GACCGGGCCTCATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGTGGAAGGGCTCGGCG 2417 Query 53591 ATCCCGAGGCGTTGTGCTCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCCCGCAACAAGG 53650 | || || || || ||| | ||||||||||| || || || ||||||| || Sbjct 2418 ACCCGCAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCTCGGCGG 2477 Query 53651 CCCGCAAGATGTTCACCGTCGAGGATCTG-GACGCCCGCATGGCTGGCATTGAGTATCGG 53709 | || || ||||| ||| | ||| || || ||| | ||||| |||| || Sbjct 2478 CGCGGCGGACCTTCACGCACGACCAGCTGCGAGAGGCG-ATGACGGGCATCGAGTTCCGT 2536 Query 53710 CGCGGCGAGGCGTGGGTCGACGAGATTCCCGACGCCTACAAGCCGATTGACGTCGTGATG 53769 | ||| || | |||||||||| || | || ||||||||||| ||| |||||| Sbjct 2537 GACACCGATGCCTTCATCGACGAGATCCCGCAGGCGTACAAGCCGATCGACCAGGTGATG 2596 Query 53770 GCCGACGCGGAGAGCCTCGTATCGGTTGACGTCGAGCTGCGCCAGGTGCTCAACGTGAAG 53829 || || || | | ||||||||| | | |||||| ||| | ||||||||||| Sbjct 2597 GCGGATGCCGCCGGACTCGTATCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAG 2656 Query 53830 GG 53831 || Sbjct 2657 GG 2658 >seq90 Length=95466 Score = 87.8 bits (96), Expect = 7e-13 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 53446 CATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGTGAGGTGTGGTTGACCCGCAAG 53505 || ||||||||| ||||| || || ||||| ||| ||| || | ||||||||||| Sbjct 69448 CACCACAACTACGTGCAGACCGAGACCCACGGTGGCGAGGAGCTGCTGGTGACCCGCAAG 69389 Query 53506 GGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCATGGGCACCCGC 53565 || ||| || |||| | || | | |||| | || || |||||||||||||| ||| Sbjct 69388 GGGGCGGTCAGCGCGCGCGCCGGCGAACTGGGGATCATCCCGGGCAGCATGGGCACGCGC 69329 Query 53566 TCGTATGTCGTCACCGGCAAGGGCAATCCCGAG 53598 ||| |||| |||||||||||| ||||| Sbjct 69328 AGCTATATCGTGCGTGGCAAGGGCAATGCCGAG 69296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188821641372036