Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq98 295 1e-75 seq353 105 1e-18 >seq98 Length=166217 Score = 295 bits (326), Expect = 1e-75 Identities = 980/1497 (65%), Gaps = 33/1497 (2%) Strand=Plus/Minus Query 8418 CAGGGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGG-CTTCCTCGCTGCGGCTGG 8476 |||||| |||| |||||| || || |||||||||| || | | | || ||| | | Sbjct 136984 CAGGGCATGCAGCAGCGCCCACGCCAGATCGGCGTGGCCGGTCGTGCGCGA-GCGCCCCG 136926 Query 8477 CCTCATAGGTGGCGCTG-CGTCCGCTGCTGGTCATGGTCTTGCGGATAGCCATAAACGAG 8535 || ||||||| ||| || |||||| || ||||||| |||| || | | ||| Sbjct 136925 CCGTGTAGGTGGT-CTGTCGGCCGCTGGCCGTGCTGGTCTTCTGGATGGCAAGCAGCGAC 136867 Query 8536 CTGGTGATGTCGGTGGCGCTGACGTCATATTCCAGACAGCCACGGCGAATAACGTCTTTT 8595 ||| |||||||| || | ||||||||||||||| | || || || Sbjct 136866 TGGGTCATGTCGGTCCAGCCGGCGTCATATTCCAGACGCTCGTTCTTGATGACATCGAAC 136807 Query 8596 GCCTTGAGCACCATTGCGGTTTTCATTTCCGGCGTGTAGCGGATA-TCGCGTGCGGCGGG 8654 ||||||||||||| || |||| || |||| ||||| || | | | |||| Sbjct 136806 GCCTTGAGCACCAGCCGCGTCTTCACCTCGGGCGAGTAGCTGAAGGTGGTCAACCCCGGG 136747 Query 8655 ATAGAACGAGCGAACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATTCCGAT 8714 | ||||| ||| || |||||| ||| ||| || | ||||||||| || || ||||| Sbjct 136746 A-AGAACTGGCGGACCAGCTGGGCCACACCGGTGCCCATGCCGGTGGCGTCGATCCCGAT 136688 Query 8715 GTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAAAGTC 8774 ||| ||| ||| | ||||| || |||| | | |||||| || ||||| Sbjct 136687 GTAGGTGACCCAGTAGCGCTGGGTGACCTTCTGGATAAACGCCGCCTGGTCAGCGAAGTC 136628 Query 8775 CATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGG 8834 |||||| || ||||||||||||| || | | ||| |||||||||| ||| ||||| Sbjct 136627 CATGCCCTTGAACTGGTGACGCTCCAGCACGCGGAACTTGCCACCGGGCACTTGGGGCGG 136568 Query 8835 TGCCAGCACCACGCATCCGGCACTGTCGCCACGGTGTGACGGGTCGTAACCAATCCAGAC 8894 |||| | |||| ||||| |||||||| | | ||||||||| |||||||| || Sbjct 136567 CGCCACAATCACGATGCCGGCGCTGTCGCCCGTCTCGGCCGGGTCGTACCCAATCCACAC 136508 Query 8895 CGGGCGGGAGCCGAACGGATTCGCGGC-AAACGGCGCA--TAGTCTTCCCA-TTCTTCCA 8950 || |||| ||| | || | ||| || ||| | | | | |||| | | ||| Sbjct 136507 CGCGCGGTCGCCATATGGGCGCATGGCGAAGGGGCTGAACTCGCCGGCCCACTCCACCCA 136448 Query 8951 GCGTGTCGACCATGCAGCGTTGCAGC-TCCTCGAACGGGAACACCGACGCCTTGTCGTCA 9009 || |||| ||| ||| | |||||| || || | ||||||||| || ||||||| Sbjct 136447 GC-TGTCCACCTGGCACGGCTGCAGCATCGTC-AGCGGGAACACGCTGGCGCTGTCGTCC 136390 Query 9010 ACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTGC 9069 || || || ||||| | |||||| || || |||||||||| ||||| |||| Sbjct 136389 ACGAACTCGCACATCAGCAGGTTGGCGAATTCCTCGGCGCTGTAATCGCGCCGCAGCTCG 136330 Query 9070 TCAATGTCGAACAGCGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGC 9129 | | |||||||| ||| || | | ||||| | ||||| ||||||||| Sbjct 136329 GCCACATCGAACAGATCGCACCCTCGGTCGGCCGCGTCGAGCACTGTGACGATCTGCCGC 136270 Query 9130 CACTGACCGTCCGCACAGAGAAGCCCACCGGCAAGAGCGTTATGACTGACGTCGATTTCC 9189 || | ||||| | ||| | | |||| | | || | || ||||| |||| || Sbjct 136269 CAGATAGCGTCCTCGCAGCGTCGGCCACTGCCCAGCCGGCCGTGGCTGACATCGA--TCG 136212 Query 9190 ACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGGTAG 9249 | | | | | | | ||| | ||| |||||| | || || | |||||| |||| Sbjct 136211 ATACCTGCTGGGAGGTCGGCTTG-CCCTTGTTGAAGCGCTCGCCTGTCCAGAAATCGTAG 136153 Query 9250 GCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTGAG 9309 || |||||||||| ||||| || ||| ||| |||||| |||| | | || Sbjct 136152 GCTTCGTGCGCCATGGTGGAAGGCGTGCTGAAGTAGGTCTTGCGCCATTTCTTGTGCATC 136093 Query 9310 GCCATACCTGATGCCACCTTACGCAG-TACCTGAAAATTCGGTA--TCCAGAAAATCTCG 9366 ||||| || || ||||| ||| | |||| | ||| ||||||| | ||| Sbjct 136092 GCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAA---GCCGTAGGTCCAGAAGAATTCG 136036 Query 9367 TCGACGTACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATC 9426 |||| ||| | | |||| | || |||||||||| | ||||||||| ||||| | | Sbjct 136035 TCGAAGTAGAAATTCCCGTGGTAGCCCTGCGCGGTGCGTGCGTTGGTGCCCAGAAAGAAC 135976 Query 9427 AGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACCAGC 9486 || | |||||| ||| ||||||| || || || ||||| ||||| ||| | || | Sbjct 135975 AGCTCAGCGCCG---TTGGCCAGGACGATGGGATCGCCGGTGAGGTCCCGGTCCAGCACC 135919 Query 9487 -CGGGCA--AAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGAC 9543 || ||| ||| | ||||| | |||| | | |||||| | || || | Sbjct 135918 TCGCGCACGAAGCCACGCATGTAGCCCAGGAAGATGTGCGCCTGACTCTTGGATGCGCTC 135859 Query 9544 AGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAA 9603 || || ||||| || | ||| | |||| ||| | |||||||||||||| ||| || Sbjct 135858 AGGAAGATCTGATTGCGGCCGCTGATCAGCGCGTCGATCAGCGCCTCGCGGGCAAAGTAG 135799 Query 9604 AACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGCCCGGCG 9663 | || ||||| ||||| || || || ||||| |||| | | |||| |||||| Sbjct 135798 TAGGTGGCGCCGATCTGCCGCGACTTGAGGATCACGCGCGTCC---GCTCGCTGCCGGCG 135742 Query 9664 CGATACCAGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGCTTTTCG 9723 || ||||| | ||| || ||||| || || | ||| ||| |||| ||| Sbjct 135741 CGGTACCAATCGCGCTGGTAATCGAAGCACCCGTCGAGGAACGCCTGGCGCAGCCGTTCC 135682 Query 9724 ATAGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGCCGCCCGCCTTTGTTGCGGTTA 9783 | |||| || ||||| ||||| | || | | ||| ||||||||| Sbjct 135681 ACTTCCTCTTCGCTGAACTCGTTCTTGCGGGCCTTCTTCTTCGGGCCAGCGTTGCGGTTG 135622 Query 9784 GCGATGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGGCT-GTAGCGGTTTACCCGTGC 9842 |||| || || ||||| ||||||||||| | | || ||| || | | || || Sbjct 135621 GCGACCGCTGGGTTCAGGTCCGCCTCGTTGCC-GCCGCCCTGGTAACGCTGGATGCGGGC 135563 Query 9843 CAGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAGTCACCGCCGGTTTT 9899 | | || || | ||| || |||||||| || || |||||||| |||||||| || Sbjct 135562 CTGCCGCTCCAGCTGCCGATGCAGCAGGTCGATCTCTTTGAAGTCGCCGCCGGTCTT 135506 Score = 257 bits (284), Expect = 3e-64 Identities = 674/1006 (67%), Gaps = 53/1006 (5%) Strand=Plus/Minus Query 22515 GACTATCATCACGGCGTGCAGGTGCTGGAGATTAACGACGGCACCCGCGTCATTTCCACC 22574 |||||||| |||||||| | || | ||||| |||| ||| |||| || ||| Sbjct 123814 GACTATCACCACGGCGTACGTGTCATCGAGATCAACGGCGGTGTCCGCCCGATCCGTACC 123755 Query 22575 GTATCCACTGCCATTGTCGGCATGGTCTGCAC-GGCCAGCGATGCGGATGCGGAAACCT- 22632 | |||| ||| | ||||||| || ||||| ||| || ||||| || || | ||| Sbjct 123754 ATCGCCACCGCCGTCATCGGCATTGTTTGCACCGGCGAG-GATGCCGACGCC--ACCCTG 123698 Query 22633 -TCCCCCTCAATAAACCTGTGCTGATTACCAATGTGCAGAGCGCAATTGCAAAGGCCGGT 22691 |||| ||||| ||| |||||| | || | |||| | | || |||| ||||| || Sbjct 123697 TTCCCGCTCAACCGACCGGTGCTGCTGACTGACGTGCTGGGGGCTATTGGCAAGGCTGGC 123638 Query 22692 AAAAAAGGCACTCTG-GCGGCATCGTTGCAGGCCATCGCCGACCAGTCAAAACCGGTCAC 22750 | ||||| ||| || || ||||||||||||| ||||||||| | || | |||| Sbjct 123637 ACCGCCGGCACCCTGCGCCCCA-CGTTGCAGGCCATTGCCGACCAGGCTAACGCCATCAC 123579 Query 22751 AGTTGTCGTGCGTGTGGAAGACGGCACCGGCGACGACGAGGAAACGAAACTCGCGCAGAC 22810 || || ||||| |||| || ||| | |||||| | || || || Sbjct 123578 GGTCGTGGTGCGCGTGGCCGAGGGC---GTGGACGAC-----AGCGCCACC-------AC 123534 Query 22811 CGTTTCCAATATCATCGGCACCACCGACGAAAACGGTCAGTACACCGGACTGAAAGCCCT 22870 || ||||| |||| || | | |||| || | |||||||| ||| | || || Sbjct 123533 CG---CCAATGTCATTGGTAAGAAGGACGGTG-CGACC--TACACCGGCCTGCAGGCGCT 123480 Query 22871 GCTGGCGGCAGAGTC---GGTAACCGGTGTTAAACCGCGTATTCTCGGAGTGCCGGGACT 22927 ||||| | | || | ||| ||| || ||||| || ||||| | ||||||||| Sbjct 123479 GCTGGTGTCCGAAGCCCAGGT---CGGGGTACGGCCGCGGATCCTCGGCGCGCCGGGACT 123423 Query 22928 GGACACCAAAGAGGTGGCTGTTGCACTGGCATCAGTCTGTCAGAAGCTGCGCGCTTTCGG 22987 ||||||| | |||| | | ||| ||||| || |||||||||| || | | Sbjct 123422 GGACACCCAGCCGGTGACCGCTGCCCTGGCCGTGATCGCCAAGAAGCTGCGGGCCATGGC 123363 Query 22988 GTATATCAGCGCATGGGGCTGTAAAACCAT----TTCCGAGGTGAAAGCCTACCGTCAGA 23043 || ||||| | |||| | | | | |||||| | || ||||| | Sbjct 123362 CTACGTCAGCT----GCGCTGCCAGCGCCTCGGTTCCCGAGGCCATCGCTTACCGCGCGC 123307 Query 23044 ATTTCAGCCAGCGTGAGCTGATGGTCATCTGGCCGGATTTCCTCGCATGGGATACGGTC- 23102 | |||||| | || ||||||||| | ||| || || ||| | || | | || | | Sbjct 123306 AGTTCAGCGACCGCGAGCTGATGTTGCTCTATCCCGACTTCGTGGCCTTCAACACCGCCG 123247 Query 23103 ACGAGTACCACCGCCACCGCGTATGCCACTGCCCGTGCGCTGGGACTGCGTGCCAAAATC 23162 | | | ||||||| || || | || || || |||||||| || ||||| |||| ||| Sbjct 123246 ATGCG-ACCACCGGCATGGCCTTCGCAACGGCACGTGCGCTCGGCCTGCGCGCCATGATC 123188 Query 23163 GACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTAAACGGTGTTACCGGC 23222 || || |||| ||||||||||| ||||||||||||| | ||| ||| || |||||| Sbjct 123187 GATGAGCAGCAAGGCTGGCATAAGTCGCTGTCCAACGTGGCCGTAGCCGGCGTGACCGGC 123128 Query 23223 ATCAGC--GCATCTGTATTCTGGGATTTGCAGGAGTCCGGC-ACCGATGCTGACCTGCTG 23279 |||||| | | | ||| |||| ||||||| |||||| ||||| || | | |||| Sbjct 123127 ATCAGCCGGGACGTCCATT--GGGACCTGCAGGA-TCCGGCGACCGACGCCGGCATGCTC 123071 Query 23280 AACGAGTCAGGCGTCACAACGCTGATTCGTCGTGACGGTTTCCGCTTCTGGGGTAACCGT 23339 || | | | |||| |||||||| |||| | | |||||||| || Sbjct 123070 AATGCCGCCGATATCACCACGCTGATCAACTCCAACGGGTACAAGTTCTGGGGATCGCGC 123011 Query 23340 ACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCGCAGGTGCTG 23399 |||||| ||||| |||||||| ||| || | || ||||||||| |||||| | ||| Sbjct 123010 ACCTGCAGCGATGAGCCGCTGTTTGCCTTCGAGACCTCCACCCGCACGGCGCAGATCCTG 122951 Query 23400 GCCGACACGATGGCTGAGGCGCACATGTGGGCGGTGGACAAGCC-CATCACCGCAACGCT 23458 |||||||| || || |||||||| || || |||||||| | |||| | |||| Sbjct 122950 GCCGACACCATCGCCGAGGCGCAGTTGGTCTACGTCGACAAGCCGCTGCACC-CCTCGCT 122892 Query 23459 GATTCGCGACATCGTTGACGGCATCAATGCCAAATTCCGTGAGCTG 23504 | | |||||||| | || |||||||| ||||| ||||| |||||| Sbjct 122891 GGTGCGCGACATGCTCGAAGGCATCAACGCCAAGTTCCGCGAGCTG 122846 Score = 86.0 bits (94), Expect = 1e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 7711 GGCATCGGTGACGTACATGATATATCCGGCATGAGCGCCGTTTTCGTAATACTTGCGGCG 7770 || |||||| | ||| | ||| | ||||| || | |||||| | ||| |||||||| || Sbjct 137661 GGAATCGGTCAGGTAGAGGATGAAGCCGGCGTGCGAGCCGTTGTTGTAGTACTTGCGCCG 137602 Query 7771 GAACAGCGTGGCCGACTCATTCAGCCAGGCAGAATTAAGGGCGCTGAGATATTCCGGCAG 7830 |||||||||||||||||| || ||| || | | | ||| | | || ||||| Sbjct 137601 GAACAGCGTGGCCGACTCGTTGAGCAGCGCGGCCTGCACGGCCGGCATCCACTCGGGCAG 137542 Query 7831 GCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTGAAACAC 7875 |||||||| |||||| | ||| | |||| |||| || |||| Sbjct 137541 GCCGTACACCTCCTGGTCTGCATCGGACTCCCGCAGCTGGTACAC 137497 >seq353 Length=102661 Score = 105 bits (116), Expect = 1e-18 Identities = 288/432 (67%), Gaps = 13/432 (3%) Strand=Plus/Plus Query 7465 CCCGACGTTCTCCGGCTTGCCGCCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAG 7524 |||| |||||| |||| | |||||||||||| || ||||| ||| | ||||| Sbjct 45064 CCCG-CGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAG 45122 Query 7525 GTCAGCGGCGCTGGCTTTTTTGATATTaaaaaaaTCGTCCTTCGTTGCCACTTCACTGAG 7584 || | |||| |||||||| || |||||||| | || || || || | Sbjct 45123 ATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCAC 45182 Query 7585 CGGGATAATTTTAATGCCGTCGGCTTTCC--CCTGCGGG-GCATAGAGAAACAGATTTTT 7641 |||||| | | ||||||||| |||| ||||| || || || | |||||| || Sbjct 45183 CGGGATGAGCTGAATGCCGTC---TTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCG 45239 Query 7642 AAAGTTGTTGCGGCCTTTCGACTTGACCA-TGTTTTCGCGAAGCATTTCGATATCGTTGC 7700 ||||||| | |||||||| || || || | ||| || ||||| || | Sbjct 45240 AAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGT-GCGCAGTGAGTCGATGTCCTCTT 45298 Query 7701 GATCCTGCACGGCATCGGTGACGTACATGATATATCCGGCATGAGCGCCGTTTTCGTAAT 7760 | |||| | || ||||| | ||||| || | |||||||| |||||| | ||| | Sbjct 45299 CCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGT 45358 Query 7761 ACTTGCGGCGGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAATTAAGGGCGCTG--AG 7818 ||||||| |||||||||||||| ||| || ||| || || |||||| || Sbjct 45359 ACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGC--GCTTTGCAGCGCTGCCAG 45416 Query 7819 ATATTCCGGCAGGCCGTACAGCTCCTGATTAATATCCGGCTCCAGCAGGTGAAACACGGA 7878 | |||||||||||||| | ||||| || ||||| | ||| ||| ||| | | || Sbjct 45417 CCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGA 45476 Query 7879 GCCGGGCGCGAA 7890 ||||| || || Sbjct 45477 ACCGGGGGCAAA 45488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93425341553226