Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028953.1 Length=110764 Score E Sequences producing significant alignments: (Bits) Value seq8755 176 3e-39 seq5676 131 1e-25 seq1668 131 1e-25 seq355 123 2e-23 seq8759 114 9e-21 seq64 111 1e-19 seq4407 89.7 4e-13 seq59 89.7 4e-13 >seq8755 Length=560 Score = 176 bits (194), Expect = 3e-39 Identities = 212/286 (74%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 97165 GTTGACCGCCGCCTCAATCTCTCCGTCGGATACGAAAGCGCCCTGTATCCGGAT-GGCAC 97223 || ||| ||||| || || |||||| | ||| |||||||| || ||| | ||| Sbjct 299 GTCGACAACCGCCGAGATTTCCTCGTCGGTGATGAACGCGCCCTGCATACGGGTCGGCTT 240 Query 97224 CCCGCGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGC 97283 || ||| |||| ||||||||| | ||||||||||| || ||||||| |||||| ||| Sbjct 239 ACC-CGCGCCCATGGGCAGGAACAGGCCGTCACCCATACCGATGAGCTTCTCGGCGCCGG 181 Query 97284 CCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACG 97343 || || ||||| || || || || ||||| | || ||||||| || | || | Sbjct 180 GCTGATCGAGGATGACTCGCGAGTCCGTCAGTGAAGACGTCGCGAACGCCAGACGCGAAG 121 Query 97344 GCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGA 97403 ||||||||| ||||| ||||| ||||| || || ||||| || |||||||| ||||| | Sbjct 120 GCACGTTGGTCTTGATCAGGCCGGTGACGACGTCGACGGACGGGCGCTGCGTTGCCAGCA 61 Query 97404 CGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT 97449 | || || |||||||| || || || ||||| | ||||||||| || Sbjct 60 CCAGGTGGATACCGGCAGCACGGGCTTTCTGCGTGATGCGGACGAT 15 >seq5676 Length=789 Score = 131 bits (144), Expect = 1e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 97652 AGGTGGGGGATACCGTTGTACGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGT 97711 ||||| |||||||| | |||||| ||||| || |||||||| |||||||| | ||| | Sbjct 70 AGGTGCGGGATACCTTCGTACGGCGTGAGCTCGACCATCTTGGGGTCGATGAGGATCATC 129 Query 97712 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 97771 || || || | |||||| ||||| || || ||||||||||| | |||||| Sbjct 130 CGTACTTCTTCCGGCGTTGCTCGGGTGAGCAACGAGACGAGCATCGAGTTCACGAAGCTC 189 Query 97772 GACTTACCTGATCCGGTGGCGCCAGCCACCAGCAGGTGCGGCATTTTGGCCAGGTTC 97828 |||||||| || ||||||| || |||||||| || |||||||| || || |||||| Sbjct 190 GACTTACCGGAGCCGGTGGAACCTGCCACCAGGAGATGCGGCATCTTCGCGAGGTTC 246 >seq1668 Length=11891 Score = 131 bits (144), Expect = 1e-25 Identities = 234/338 (69%), Gaps = 3/338 (1%) Strand=Plus/Plus Query 100102 GTTC-AGGTAGTAGGGCTTGTCGAGCATGATCGGGTCGACCTCCCCGGCCGGCACGAACT 100160 |||| |||||||| ||||||||||| ||| | ||||||||| | ||| |||||||||| Sbjct 3745 GTTCGAGGTAGTACGGCTTGTCGAGGGTGAGCAGGTCGACCTGCTCGGAGGGCACGAACT 3804 Query 100161 CTACGACGTCAATCACCTTGTTGGTTTCGCTGGGCAGCTCTGCCAAGTCCTCATTGGTCA 100220 | |||||||| ||| || | | | || ||| || | || | ||| || || |||| Sbjct 3805 CGACGACGTCGATCTCCCGGCTCTTCTCCGCGGGGAGGGCGGCGAGGTCGTCCTTCGTCA 3864 Query 100221 GTAGGGCGGTTTGCCCGTCGACCTCGAACACCTTGCCCAGATCGGCCGTGTG-GACCTGC 100279 | | | |||| || || ||| | || | | | | | |||| ||| | || | Sbjct 3865 GCACGACGGTCTGGCCTTCGTCGACGTAGGCGCGGTCGATGTCGG-CGTACGCCACGGTC 3923 Query 100280 TCACCGCAGCATTCACAGATCTTGTGATACTTGATCCGCCCGCCGTCCTGGACGTGCGCC 100339 || |||||| ||| ||| | ||||| ||| ||||||||||||| ||||| || Sbjct 3924 TCTCCGCAGACTTCGCAGGTGCGCTGATAGCGGATGCGCCCGCCGTCCTTCTCGTGCACC 3983 Query 100340 AGATGGCCCTTCAGGTCGTGCTCTTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACC 100399 |||| | || |||||| || ||||| || | ||||| ||| |||||||| || || Sbjct 3984 TGATGCAGCGGCACGTCGTGGTCCTCGGTCGCGGAGTACACCTTGACCGGCACATTCACG 4043 Query 100400 AACCCGAAGTTGACCGCGCCTGTCCAAACCGCTCTCAT 100437 | |||||| | | ||||| |||| | || ||||| Sbjct 4044 AGCCCGAACGTCAGTGCGCCCTTCCAGATCGTCCTCAT 4081 >seq355 Length=98473 Score = 123 bits (136), Expect = 2e-23 Identities = 235/338 (70%), Gaps = 15/338 (4%) Strand=Plus/Minus Query 97188 CGTCGGATACGAAAGCGCCCTGTATCCGGAT-GGCACCCCGCGCCCCCACGGGCAGGAAT 97246 ||||||| ||||| ||||| || | ||||| |||| | | ||| ||| || | | Sbjct 86502 CGTCGGAGACGAACGCGCCGTGAACACGGATCGGCAAACTGGTGCCCGGCGG-CATGTAG 86444 Query 97247 AACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 97306 | | |||||| |||| || |||||||| ||||||| ||| | ||| |||| | Sbjct 86443 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTCCGGGAA 86384 Query 97307 TCGGT---GAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGG 97363 ||| | | || | ||| |||| | | | ||| | ||||| ||||| ||| Sbjct 86383 TCGATCTTGCTCGACACC-TGG--AACGCCATGCGGGTCGGGATGTTGGCCTTGATCAGG 86327 Query 97364 CCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCG 97423 || |||| || ||||| || || ||||| ||||| |||| | || || ||||| || Sbjct 86326 CCGGTGATCACGTCCACCGACGGACGCTGGGTCGCGAGGATCAAGTGGATCCCGGCGGCC 86267 Query 97424 CGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCTTTCTTGTAGCCGCCCA 97481 ||||||||||||||||| ||| | || ||| | |||| | |||||| | || || Sbjct 86266 CGCGCCTTCTGGGCGATACGGGCGATCAGTT--CTTCGA---CCTTCTTGCCGACGATCA 86212 Query 97482 TCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATG 97519 |||| | ||| || | |||||||||||| ||||||||| Sbjct 86211 TCATCATGTCGGCAAATTCGTCGACCACCACCACGATG 86174 >seq8759 Length=471 Score = 114 bits (126), Expect = 9e-21 Identities = 148/202 (73%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 97324 GGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGA 97383 |||||| | || | |||||| ||||| | ||||| || || ||||| || || ||| Sbjct 14 GGCGAAGGCCAGTCGAGACGGGACGTTCGCCTTGATGAGTCCGGTGACGACGTCGACGCT 73 Query 97384 GGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCG 97443 |||||||| ||||| |||||||| || || |||| || ||||| ||| | |||||| Sbjct 74 CGGCCGCTGGGTCGCGAGGACGAGGTGGATGCCGGAGGCTCGCGCGAGCTGCGTGATGCG 133 Query 97444 GACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTC 97503 || || | |||| || || | | || | ||||||||||||| ||||| ||||| Sbjct 134 CACGATCGAGTCCTCCACGTCG--CGAGGGGC-GACCATCATGAGGTCGGCGAGCTCGTC 190 Query 97504 GACCACTACCACGATGTAGGGG 97525 |||||| |||| || ||| ||| Sbjct 191 GACCACGACCAGGAGGTACGGG 212 >seq64 Length=260832 Score = 111 bits (122), Expect = 1e-19 Identities = 140/188 (74%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 97342 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97401 ||| | ||||| ||||| ||||| |||| || |||||| ||| || ||||||||||| Sbjct 1263 CGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGTTGCGTCGCCAG 1322 Query 97402 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCG 97459 || | ||| || ||||| || |||||||||||||| | |||| | || ||| | ||| Sbjct 1323 GATCAAATGGATGCCGGCCGCACGCGCCTTCTGGGCCAGGCGGGCGATCAGTT--CTTCG 1380 Query 97460 ACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATG 97519 | || |||||| | ||||||| ||||| || || ||||||| || ||||||||| Sbjct 1381 A--TC-TTCTTGCCCACCACCATCATCAGGTCGGCCAGCTCGTCGATGACCACCACGATG 1437 Query 97520 TAGGGGAG 97527 ||| || Sbjct 1438 GTGGGCAG 1445 >seq4407 Length=7959 Score = 89.7 bits (98), Expect = 4e-13 Identities = 188/279 (67%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 97543 GTGGCGCACGCCGGCTTCCTGCATCTGCCGGTACCGGTCATCCATCTCC---ACGGTGAG 97599 || |||||||||| | | ||||| ||||| ||||| ||||||||| ||||| Sbjct 276 GTTGCGCACGCCGACCTTGGACATCTTGCGGTAGCGGTCTTCCATCTCCTTGACGGT--- 220 Query 97600 CCACCGCAGCGTCTTAACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGG 97659 ||| ||||| || |||| | || ||||| || || ||| | || || || Sbjct 219 CCATTTCAGCGCTACGACGGCCTTCTTCGGATCGGTCACGACGGGCGTGAGCAGATGCGG 160 Query 97660 GATACCGTTGTACGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGTTTGACCCG 97719 || |||| || | ||||||| ||||||||| ||||||||||| || | | | Sbjct 159 AATGCCGTCATAGATCGACAGTTCCAGCATCTTCGGATCGATCATGATCAGGCGGCACTG 100 Query 97720 ATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTACC 97779 || || | ||||| |||| || | | ||| | ||||||| ||| ||||| Sbjct 99 TTCCGGGGTCATGCGGTAAAGCAGCGACAGGATCATGGTGTTGATGGCAACGGATTTACC 40 Query 97780 TGATCCGGTGGCGCCAGCCACCAGCAGGTGCGGCATTTT 97818 || ||||||| || || |||||||| |||||||| || Sbjct 39 CGAGCCGGTGGTACCTGCAACCAGCAGATGCGGCATCTT 1 >seq59 Length=142688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 97348 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97407 ||||| ||||| ||||| |||| || ||||| || || ||||| || ||||||| || Sbjct 115936 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGACGGGCGCTGGGTGGCCAGGATCAG 115877 Query 97408 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97467 || || ||||| || ||||||||||| || | || | ||| | |||| | || Sbjct 115876 GTGGATGCCGGCCGCACGCGCCTTCTGCGCCAAACGTGCGATGAGCTCTTCGA---CCTT 115820 Query 97468 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGGAG 97527 |||| | || |||||| | ||| |||| |||||||| | | ||||||| | || || Sbjct 115819 CTTGCCGACGATCATCATCATGTCGGCGAATTCGTCGATGAAGATCACGATGAACGGCAG 115760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354275405174075