Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq3473 304 5e-78 seq46 109 2e-19 seq90 104 9e-18 >seq3473 Length=4258 Score = 304 bits (336), Expect = 5e-78 Identities = 776/1158 (67%), Gaps = 61/1158 (5%) Strand=Plus/Plus Query 54888 TCGACGACCAGACGCTTGCGCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTCTATCCGC 54947 ||||||| |||| || || |||||||| | ||| |||| ||| || | |||| Sbjct 1539 TCGACGAGAAGACACTCGCTCAGGCGCACACCACGGCCCGCATGCCGTTCATCCACCCGC 1598 Query 54948 ATGTGGCGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGCAGTGTCGGCACGGTGATCC 55007 | |||| |||||||| || ||||| |||||||||| | |||||| |||| |||| Sbjct 1599 ACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGACGGTCGGCTCGGTCATCC 1658 Query 55008 CGACCGAGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATATTGGCTGCGGCATGATCG 55067 |||| ||||| |||| |||||||| || || ||||| || |||||||| ||||||| Sbjct 1659 CGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACATCGGCTGCGGGATGATCG 1718 Query 55068 CGGCCCGCACCACGTACACGGCGAACGATCTTGAGGGCCTCAAGCTGTCGGATCTGCGGG 55127 | | || || ||| |||| || ||| | || || | ||| | || || |||| Sbjct 1719 CCGTTCGTACGCCGTTCACGAGGAGCGACGTCGACGGTCGTCGGCTCGCCGACCTCCGGG 1778 Query 55128 AGTCGATCGAGTCCGCTATCCCGATGAGCGCCGGGGGATACAAC---AAGAGCCTGA--A 55182 || ||||||| ||| ||||| || ||||| | |||||| ||| | || | Sbjct 1779 AGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGTACAACCGCAAGGTCGTGGCCA 1838 Query 55183 CCGTTTTGAGTTCACCGGCGCCCGGCTGGACTGGCTGCAGCTCGTCGCTACCCGGTTCGA 55242 ||| || |||| ||| | | |||| |||||||| || | | || Sbjct 1839 CCGCG--GA----ACCG-CGCATCACCGAGCTGGA-GCAGCTCGCCGAGAA---GAACGG 1887 Query 55243 CGTCGACCTGTCGCACTCCCC---GAAGTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGG 55299 | |||||| | |||| | | | ||| ||||| |||| | |||||||| || || Sbjct 1888 CTTCGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGTTGGGCACGCTCGGTTCAGG 1947 Query 55300 CAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACCGGGTGTGGTTGTTCCTGCACTC 55359 ||| |||||||||||| ||| |||| | ||||| ||||| ||| ||||||||||||| Sbjct 1948 CAACCACTTCATCGAGGTGTCGGTCGATGAGCTCGATCGGGTCTGGCTGTTCCTGCACTC 2007 Query 55360 AGGTTCTCGTGGCGTCGGTAACAAGATCGCGCAGAAGCACATTCAGGCCGCGCAG-GGCT 55418 || || || |||||||| ||||||||||| | | ||||| | ||| ||| |||| Sbjct 2008 GGGCTCGCGAGGCGTCGGCAACAAGATCGCCGGGCACCACATCGCCGTCGCCCAGCGGCT 2067 Query 55419 ATTGCCTCGCCAACGG--GCTGCAGGTGCCGCACAAGGATCTGGCGTACCTCGTCGAGGG 55476 | | | || || | | | | || || || ||||| ||||| |||||||| Sbjct 2068 ---GGCGAGGCAGTGGTGGATCGACCTTCCCGACCCCGACCTGGCATACCTGGTCGAGGG 2124 Query 55477 CACGGTCGAGTTCGACCGCTACCTCGTCGAATTGCGCTGGGCGCAGCGGTTCGCG-TACT 55535 ||| |||||| ||||||| || || |||| ||||| |||| |||||| | || Sbjct 2125 CACACCGGAGTTCACCCGCTACATCCGGGAGCTGCGGTGGGCCCAGCACTTCGCGCTGCT 2184 Query 55536 ACAACCGCGCCGAGATGATGGACCG----ATTCGCGCAGGCGTTCAATCATTGGATCGGC 55591 ||||| | ||||||||||| || || || ||||| || ||| Sbjct 2185 G-AACCGGGAGGAGATGATGGATCGCGTCATCCG-GCAGGTGT-------------CGGA 2229 Query 55592 GCGCC-CGGCTACCCGGCCGAGACGATCGTCGAGACCATCAACGCGCACCACAACTACAC 55650 | || ||| ||||| ||| ||| | ||| ||||||| |||||||||| ||| Sbjct 2230 GTTCCTCGGAACCCCGGTCGA--CGAACAG-GAGCGCATCAACTGCCACCACAACTTCAC 2286 Query 55651 GCAGAAGGAGCAGCACGGCGGCCGTGATGTGTGGCTGACCCGCAAGGGCGCGATCGACGC 55710 || |||| ||||| ||| | |||||| || | || ||||| || ||| | || Sbjct 2287 CGAGTCGGAGAAGCACTACGGGAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGC 2346 Query 55711 GAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCGTATGTCGTG-A 55769 | ||| ||| | |||||| || || || |||||||| ||| || || || ||| | Sbjct 2347 GGACGCCGGTCGACCGGGCCTCATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGTGGA 2406 Query 55770 CCGGCAAGGGTAATCCCG-AGGCGTTGTGCTCAGCGCCGCACGGTGCGGGCCGCCGGTTC 55828 ||| || | |||| || || || ||| | ||||||||||| || || || | Sbjct 2407 AGGGCTCGGCGA--CCCGCAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTAC 2464 Query 55829 TCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCGACGACCT-CGAGGCGCGTATGCAGGG 55887 || ||| || |||||| | |||||| |||| | || |||| ||| ||| ||| Sbjct 2465 TCCCGCTCGGCGGCGCGGCGGACCTTCACGCACGACCAGCTGCGAGAGGCG-ATGACGGG 2523 Query 55888 CATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGCATACAAGCCGAT 55947 |||||||| ||| | ||| || | |||||||||| || | || ||||||||||| Sbjct 2524 CATCGAGTTCCGTGACACCGATGCCTTCATCGACGAGATCCCGCAGGCGTACAAGCCGAT 2583 Query 55948 CGACGTCGTGATGCACGACGCCGAGAGCCTGGTGTCGGT---GGACGCTGAGCTGCGGCA 56004 |||| |||||| || |||| | || || ||| | | || | ||||||||| Sbjct 2584 CGACCAGGTGATGGCGGATGCCGCCGGACTCGTATCGATCCGGCACAC---GCTGCGGCA 2640 Query 56005 GCTCTTGAACGTCAAGGG 56022 | || | ||||| ||||| Sbjct 2641 GATCGTCAACGTGAAGGG 2658 >seq46 Length=239904 Score = 109 bits (120), Expect = 2e-19 Identities = 478/729 (66%), Gaps = 53/729 (7%) Strand=Plus/Minus Query 55275 AGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCG 55334 |||| || ||||||||||| |||||| ||||||||||| ||||||| || | | Sbjct 144795 AGCACCTGGGCACGCTGGGTACCGGCAACCACTTCATCGAAGTGTGCCTGGATGAAGCGG 144736 Query 55335 ACCGGGTGTGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCGCGCA-G 55393 ||||||||| | |||||||| || || || |||||||| ||| |||| ||| | Sbjct 144735 GGTCGGTGTGGTTCATGCTGCACTCGGGGTCGCGCGGCGTCGGCAACGCCATCG-GCACG 144677 Query 55394 AAGCACATTCAGGCCGCGCAGGGCTATTGCCTCGCCAACGGGCTGCAGG------TGCCG 55447 | | ||| || || || | | |||| | || ||| |||| Sbjct 144676 ATGTTCAT------CGAGCTGGCCAAGAAAGACGCCGAACAGCACCAGCGCAACCTGCCC 144623 Query 55448 CACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCT-CGTCGA 55506 || |||| ||||||||| ||| || ||| || | |||| | ||| | ||| | Sbjct 144622 GACCAGGACCTGGCGTACTTCGAGGAAGGCTCGAAATACTTCGGCGACTATGTGCGT-GC 144564 Query 55507 ATTGCGCTGGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAGATGATGGACCGATTCGC 55566 || ||||||||||| ||||||| | |||||| | | ||||||| | || | | Sbjct 144563 GGTGGGCTGGGCGCAGAAGTTCGCGCGCGCCAACCGTGAAGTGATGATGCATCGCCTGGT 144504 Query 55567 GCAGGCGTTCAATCATTG-GATCGGCGCGCCCGGCTACCCGGCCGAGACGATCGTCGAGA 55625 | |||| | || | |||| | | || | ||| |||| || | | || Sbjct 144503 G--GGCG------CGGTGCGCTCGGTGATCA--GCAAGCCGTTCGAGGCGCACATGGAAG 144454 Query 55626 CCATCAACGCGCACCACAACTA---CA--CGCAGAAGGAGCAGCACGGCGGCCGTGATGT 55680 | | ||| ||||||||||| || ||| ||| | | ||| |||| || || Sbjct 144453 CGGTGAACTGCCACCACAACTATGTCAGCCGC-GAA--ACC--CACTTCGGCGAAGAGGT 144399 Query 55681 GTGGCTGACCCGCAAGGGCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGG 55740 ||||||||||||||||||| | ||| || | ||| | || |||| | |||||||| Sbjct 144398 ACTGCTGACCCGCAAGGGCGCGGTGAGCGCCAAGGCGGGCGAGCTGGGCATCATTCCGGG 144339 Query 55741 CTCGATGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGTAATCCCG-AGGCGT--TGTG 55797 | |||||| || || ||||| ||||||||| || || | | || | || | Sbjct 144338 CAGCATGGGCGCCAAGAGCTACATCGTGCGCGGCAAGGGCAACCCGGAAAGCTTCATGAG 144279 Query 55798 CT-CAGCGCCGCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCA 55856 || |||| ||||| || |||||| | | ||||| ||||| ||||||| || Sbjct 144278 CTGCAGC----CACGGCGCCGGCCGCAAGATGAGCCGCACCAAGGCCAAGAAGCTGTACA 144223 Query 55857 CGGTCGACGACCTCGAGG-CGCGTATGCAGGGCATCGAGTACCGCAAGGGCG-AGGCGTG 55914 |||| | ||||| | || |||| | | ||| | || | |||||||| || ||| Sbjct 144222 CGGTGGCCGACCAGGTGGCCGCG-ACCGAAGGCGTGGAATGCCGCAAGGACGCCAACGT- 144165 Query 55915 GGTCGACGAGATTCCCGA-CGCATACAAGCCGATCGACGTCGTGATGCACGACGCCG-AG 55972 | ||||||||| |||||| || |||||| ||||||| ||||||||| | ||| | || Sbjct 144164 GATCGACGAGA-TCCCGATGGCGTACAAGGACATCGACGCCGTGATGCA-GGCGCAGCAG 144107 Query 55973 AGCCTGGTG 55981 ||||||| Sbjct 144106 GACCTGGTG 144098 >seq90 Length=95466 Score = 104 bits (114), Expect = 9e-18 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 54920 ATCGCCGATCTGCCTTTCGTCTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGC 54979 ||||||| |||| |||||| ||| |||||| ||||||| || | ||| | ||| Sbjct 70168 ATCGCCGCGGTGCCGTTCGTCGGCCCGTGGGTGGCGGTGATGCCGGACGTGCACGTAGGC 70109 Query 54980 AAGGGCAGCAGTGTCGGCACGGTGATCCCGACCGAGGGCGCCGTCATTCCCGCCGCGGTG 55039 || || || || ||| |||||||||| ||| ||||| ||||||| |||||||| Sbjct 70108 AAAGGGGCCACCGTGGGCTCGGTGATCCCTACCCGCGGCGCGATCATTCCGGCCGCGGTC 70049 Query 55040 GGTGTCGATATTGGCTGCGGCATGATCGCGGCCCGCACCACG 55081 || || || || |||||||||||| |||| ||||||||| Sbjct 70048 GGCGTGGACATCGGCTGCGGCATGGCGGCGGTGCGCACCACG 70007 Score = 98.7 bits (108), Expect = 4e-16 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 54907 GCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTCTATCCGCATG-TGGCGCTGATGCCCG 54965 |||| |||| | ||||| ||||| ||| || | |||| | | || ||||||||| Sbjct 11445 GCAGCTGCAGAACATCGCGCGCCTGCCCTTCATCCA-CCGCTGGATCTCGGTGATGCCCG 11503 Query 54966 ATGCGCATTTCGGCAAGGGCAGCAGTGTCGGCACGGTGATCCCGACCGAGGGCGCCGTCA 55025 | | ||| | ||||||||| || ||||| ||||| | || ||| ||||| ||| Sbjct 11504 ACGTGCACCTGGGCAAGGGCGCCACCATCGGCTCGGTGGTGCCCACCATCGGCGCGATCA 11563 Query 55026 TTCCCGCCGCGGTGGGTGTCGATATTGGCTGCGGCATGATCGCGGCCCGCACCACG 55081 | || || || ||||| || || || ||||||||||||||||| ||||||||||| Sbjct 11564 TCCCGGCGGCCGTGGGCGTGGACATCGGCTGCGGCATGATCGCCACCCGCACCACG 11619 Score = 93.3 bits (102), Expect = 2e-14 Identities = 240/358 (67%), Gaps = 12/358 (3%) Strand=Plus/Minus Query 55637 CACCACAACTACACGCAGAAGGAGCAGCACGGCGGCCGTGATGTGTGGCTGACCCGCAAG 55696 |||||||||||| ||||| ||| ||||| ||| || || | ||||||||||| Sbjct 69448 CACCACAACTACGTGCAGACCGAGACCCACGGTGGCGAGGAGCTGCTGGTGACCCGCAAG 69389 Query 55697 GGCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGT 55756 || ||| || |||| || || | | ||| | || |||||| |||||||| | Sbjct 69388 GGGGCGGTCAGCGCGCGCGCCGGCGAACTGGGGATCATCCCGGGCAGCATGGGCACGCGC 69329 Query 55757 TCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGCTCAGC-GCCG-CACGGTG 55814 ||| ||||| |||||||| ||| ||||| | | | |||| || | ||||||| Sbjct 69328 AGCTATATCGTGCGTGGCAAGGGCAATGCCGAGAGCT--TCCACAGCTGCAGCCACGGTG 69271 Query 55815 CGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCAC---GGTCGACGACCTCG 55871 | |||||| | | |||| ||||||| ||| | |||| || | | ||| || Sbjct 69270 CCGGCCGCGTGATGAGTCGCAGCGCGGCGCGCCAGCAGATCACCCTGGCCCAGCACCGCG 69211 Query 55872 AGGCGCGTATGCAGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCG 55931 ||||| ||| | | || | |||||||| | |||| | |||| || |||| Sbjct 69210 AGGCGACCGCGCA---CGTGGAATGCCGCAAGGATGCGGCGGTGATCGATGAATCCCCCG 69154 Query 55932 ACGCATACAAGCCGATCGACGTCGTGATGCACGACGCCGAGAG-CCTGGTGTCGGTGG 55988 || |||||| ||||||||| |||||| || ||| | | | ||||||| ||||| Sbjct 69153 CAGCCTACAAGTCGATCGACGCGGTGATGGCCG-CGCAGCGCGACCTGGTGGAGGTGG 69097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193803430364754