Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq3870 95.1 1e-14 seq5011 86.0 7e-12 >seq3870 Length=345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 201/299 (67%), Gaps = 16/299 (5%) Strand=Plus/Minus Query 141621 GATATCTGGGTACATACGTTTCGAAGCGCATTCCAGAGCCAATTGTTTGATGTCATAGTT 141680 |||||| || ||||| || || ||||| ||||| |||| ||||||||||| ||||| Sbjct 302 GATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTT 243 Query 141681 ACGATCCCCAGGATTCATGTTTACACCTTTTTCCAT---AAACATGACCAGTTTAGGGAA 141737 |||| || || ||| | ||| | || |||| |||||||| ||||| Sbjct 242 CGGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCAAAC---ACCAGTTTCGGGAA 186 Query 141738 CACAGGGGTAATACCTTGTTTACCCAGACCACGAATACGGTTTTTCAGAATCGCTTTCTG 141797 ||| | || ||| | |||||| || || |||||||| ||| |||| || ||| Sbjct 185 CACCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATCGATTCCTG 126 Query 141798 GATCATTCGTTCAAACATTCCC-----GTACCAGTACCGAAAGTAATAGTAACGAAAGGT 141852 |||| || |||||| || || ||| ||| || || || || || Sbjct 125 AATCAGGCG-----CGATTCCCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGC 71 Query 141853 GTTTGTCCGTTGGCAGTATGCAGCGTGTTAACTTCGTATTCATACGATTGGAAAGCATC 141911 || || |||||||| || ||||| ||||| |||||||| || ||| ||||| ||||| Sbjct 70 GTCTGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATC 12 >seq5011 Length=2423 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 78496 GTCAGGAGAGCGTAGGAGGCGATATTGAACGGCAACCCTAAGAAGACATCAACCGAACGC 78555 ||||| || || ||||| |||||||||||||||| || | |||| ||| | || ||| Sbjct 457 GTCAGCAGGGCATAGGATGCGATATTGAACGGCACGCCGAGAAAGATATCGGCGGAGCGC 516 Query 78556 TGATACCACTGTAGAGACAGTTTACCGTTGATTACGACGAACTGGAAGAAACAGTGACAC 78615 || || ||| || || || |||| | ||| ||||||||| | ||||| || Sbjct 517 TGGTAGAGCTGGCAGGAAAGCTTTCCGTCGGCCACGTAGAACTGGAACAGGCAGTGGCAG 576 Query 78616 GGACGCAATGCCATTTTATCCA-GATCAACAGGGTTCCATGCGGAAACGAT--GATCCCG 78672 || ||| ||||||| ||| | || | | || ||||||||||||||||| || ||| Sbjct 577 GGCGGCAGCGCCATTTCATCGACGAGC-GCCGGATTCCATGCGGAAACGATCAGACGCCG 635 Query 78673 CGA 78675 ||| Sbjct 636 CGA 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568400217164160