Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_029044.1 Length=154434 Score E Sequences producing significant alignments: (Bits) Value seq3559 93.3 4e-14 seq340 89.7 5e-13 seq9125 87.8 2e-12 seq29 86.0 6e-12 seq375 84.2 2e-11 seq47 82.4 8e-11 >seq3559 Length=12351 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 113101 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 113160 || |||||||||||||| | | || ||| ||||| | |||| ||| |||||| Sbjct 3516 GGGCCGGGCCGTGGCTCGGGTGCCGGGTCGATGGTCGCGTACGCGATGAAGATCACCGAC 3575 Query 113161 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 113220 ||||||| || | ||| |||||| ||||||||||| ||||||| ||||| | | Sbjct 3576 CTCGACCCACTCGAACACGGCCTGATCTTCGAGCGCTTCCTCAACCCCGACCGTGTCTCC 3635 Query 113221 TTCCCCGACATCGACGTCGACTTC 113244 | |||||| |||||||||||||| Sbjct 3636 ATGCCCGACTTCGACGTCGACTTC 3659 >seq340 Length=55687 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/147 (74%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 113100 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 113159 |||||| |||||||| |||| | ||||||||||| ||| | || |||||| Sbjct 6316 CGGCCCCGGCCGTGGTTCCGGTGCCGGCTCGCTGGTGGCCTGGGCGCTGCAGATCACCGA 6375 Query 113160 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCC 113217 ||||||||||| |||| ||||| |||||||||| || ||||||| || ||| | Sbjct 6376 TCTCGACCCGATCCCGTACAACCTGCTGTTCGAGCGGTTCCTCAACCCCGAACGCGTGTC 6435 Query 113218 GACTTCCCCGACATCGACGTCGACTTC 113244 || | |||||| ||||| |||||||| Sbjct 6436 GA--TGCCCGACTTCGACATCGACTTC 6460 >seq9125 Length=594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 151082 CGGCCTGCTGCAGCGCAAGGGCCTGATCGAGGACCCGCAGATTCTCATCGCGGCCACCGG 151141 ||| |||||||| |||||||| || || ||||||||||| ||| | | ||| Sbjct 29 CGGGCTGCTGCAACGCAAGGGATACGCGGATGATCCGCAGATTCTGTTCGGTGGTATCGG 88 Query 151142 TGATGCCAACAGCGACCGGGTGCCGCTGCAGGTCGGCCAGTTCGAGTCCGACAACCGCAT 151201 || ||| | ||| | |||||| || || ||||||||||||||||| | ||| || Sbjct 89 CGACGCCGATTCCGATCAGGTGCCACTACAAGTCGGCCAGTTCGAGTCGGGTAACGCGAT 148 Query 151202 CGACG-CCATGATCGAGGCCATGTACCTCGAAGGCTTCGGGGGCGGGCAGGCACACGAGA 151260 |||| || ||| | |||| | |||||| ||| ||| || || ||| || | Sbjct 149 GGACGAGCAGCTTCG-GACCATCTTCCTCGAGGGCAACGGTGGTGGACAGAAGTCGGAAA 207 Query 151261 CCTACGAGCTCGCGGCCTACTTCCTGGCCCGGCACACC--TACCTGGAGCCGTGGCACAA 151318 ||| || | || || || ||| |||| || |||||| ||| ||| | ||| | || Sbjct 208 GCTATGAATTGGCAGCATATTTCATGGCGCGCCACACCAGTAC--GGATGCCTGGGAGAA 265 Query 151319 GCAGGGGCGCAAGGGCTATGCCATCTTCATCGGTGACGAG 151358 || || | || ||||| | || ||||||| |||||| Sbjct 266 GCGCGGAAGGAAAGGCTACCTCTTCATCATCGGCGACGAG 305 >seq29 Length=97445 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/76 (86%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 90722 ACGGGGTGTAGTTCAGT--GGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGA 90779 ||||||||||| ||||| || |||||||| ||| ||||| ||| ||||||||||||| Sbjct 16047 ACGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGA 16106 Query 90780 ATCCTGTCACCCCGAC 90795 |||||||| ||||||| Sbjct 16107 ATCCTGTCTCCCCGAC 16122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 90723 CGGGGTGTAGTTCAGT--GGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 90780 |||||||||| ||||| || |||||||| ||| ||||| ||| |||||||||||||| Sbjct 15833 CGGGGTGTAGCTCAGTCTGGTAGAGCGCTACGTTCGGGACGTAGAGGTCGCAGGTTCGAA 15892 Query 90781 TCCTGTCACCCCGAC 90795 ||||||| ||||||| Sbjct 15893 TCCTGTCTCCCCGAC 15907 >seq375 Length=82088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 113092 TGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGC 113151 |||| ||| ||||| ||||| || |||| || || |||||||| | |||| ||||| Sbjct 20612 TGCCCGTG-GGCCCCGGCCGGGGTTCCGGCGCCGGTTCGCTGGTGGCGTACGCGCTGGGC 20554 Query 113152 ATCACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGAC 113211 || ||| | ||||||||| |||||| || ||||||||||||| | || || || Sbjct 20553 ATTACCGACCTGGACCCGATCCGCTACGACTTGCTGTTCGAGCGCTTCCTGAATCCCGAG 20494 Query 113212 CGCCCCGACTTCCCCGACATCGACGTCGACTTC 113244 || | | | |||||| |||| |||||||| Sbjct 20493 CGGGTCTCCATGCCCGACTTCGATATCGACTTC 20461 >seq47 Length=198233 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 95738 TCGATGCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGAT 95797 || ||||||| ||||||||| ||||||||| | ||||||||||||| | ||||||| | | Sbjct 183132 TCAATGCGAAAGTAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTT 183191 Query 95798 CGTAACCCGTTCTTCGCTCT 95817 || | | ||| |||||||| Sbjct 183192 CGAATCTCGTCTTTCGCTCT 183211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493997022926480