Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq2876 87.8 6e-13 seq1610 86.0 2e-12 seq6915 84.2 7e-12 >seq2876 Length=5706 Score = 87.8 bits (96), Expect = 6e-13 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||| ||||||||||| ||||||||||| |||||||||||||| |||| Sbjct 2463 CGGGGTGGAGCAGTTCGGTAGCTCGCCGGGCTCATAACCCGGAGGTCGCAGGTTCAAATC 2522 Query 21210 CTGTCTCCGCAAC 21222 ||||| ||||||| Sbjct 2523 CTGTCCCCGCAAC 2535 >seq1610 Length=2511 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| ||||| ||||||| |||| Sbjct 114 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCACAGGTTCAAATC 55 Query 21210 CTGTCTCCGCAACCA 21224 ||||| ||||||||| Sbjct 54 CTGTCCCCGCAACCA 40 >seq6915 Length=372 Score = 84.2 bits (92), Expect = 7e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || ||||||| ||||||||||| ||||||||||| |||||||||||||| |||| Sbjct 69 CGGGGTGGAGCAGCTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCGCAGGTTCAAATC 10 Query 21210 CTGTCTCCG 21218 ||||| ||| Sbjct 9 CTGTCCCCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162504869075886