Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq332 461 2e-125 seq447 302 1e-77 seq846 208 2e-49 seq83 93.3 1e-14 seq50 91.5 5e-14 seq201 89.7 2e-13 >seq332 Length=28461 Score = 461 bits (510), Expect = 2e-125 Identities = 688/971 (71%), Gaps = 19/971 (2%) Strand=Plus/Plus Query 30458 ATGAAGGTATTCAACCAATACCTCAAAGCTGCAACTATCGAGACGCTGAACCAGGATGTC 30517 ||| |||| |||||| | ||| ||| | || | |||||||||||| |||| | || Sbjct 14062 ATGCAGGTTTTCAACAAGTACATCATGCCGGCGATCATCGAGACGCTGGGCCAGCAGATC 14121 Query 30518 GAGAAGTTCAACGCCGCCTCGGCCGGCGCCATCCGCCTGACCACGCAGGGCATCGACGGC 30577 |||||||||| || || || | |||||||||| ||| | ||| ||| || ||| Sbjct 14122 CAGAAGTTCAATGCGGCGTCCGGCGGCGCCATCATGCTGTCGACGGGTGGCTGGGAGGGC 14181 Query 30578 GACTTCCTGCAAGAATCCTTCTGGGCTGGCCTGCATGGCGCCCAGCGTCGTGTCGATCGC 30637 |||||||| || ||||| |||| || | | | || |||| | || || ||||||||| Sbjct 14182 GACTTCCTCCAGGAATCGTTCTATGCCGCCATCCACAGCGCGCGCCGCCGCGTCGATCGC 14241 Query 30638 TACGCCGCCAACGGCGCCCAGTCGGCAACCGCGCTCTCCCAGAAGCAGTACGACGCTGTC 30697 |||||| |||||||| | | | | |||| || ||||| | || || | | || Sbjct 14242 TACGCCTCCAACGGCAACGCGACCCCGACCGATCTGACCCAGCTGAAGCACAGCTCGGTG 14301 Query 30698 AAGGTGGCCGGTGGCTTTGGTCCGATCCTGTGGGAGCCCTCGCAGCTCTCCTGGATTCAG 30757 ||||| ||||| ||||| || || |||| | || || ||| | ||||| | | Sbjct 14302 AAGGTCGCCGGCGGCTTCGGCCCCATCCGCTTCGAACCGGGTCAGATGACCTGGCTGAAC 14361 Query 30758 AAGAGCCCGGAAGAGGCGCTGGAAGTCATCAGCCGCAACCTGTCCGAGGCAATCGTGGCG 30817 ||| | ||| || | | || ||| | |||||| | ||||||| | || | Sbjct 14362 AAGCCCACGGCCGAAGGCATCGAGGTCGCCTCGCGCAACTTCGCCGAGGCGTTGCTGCAG 14421 Query 30818 GATCAGCTGAACACCGTAATCGCCGCCCTGGTCGCTGCTATCAGCAACCAGGCCGCAGCG 30877 |||||||||||| ||| ||||||||| || || || ||||||||||||||||| || Sbjct 14422 GATCAGCTGAACTCCGCCATCGCCGCCAGCGTGGCCGCCATCAGCAACCAGGCCGCGGCC 14481 Query 30878 ACCAACGACGTGTCGGCTACTGCCGGTGTTACCTATGCCGCCATCAACGCCGCGCACGCC 30937 || |||||||| ||||| || ||| | ||||| | || | |||| |||||||||| Sbjct 14482 ACGAACGACGTTTCGGCGACGCTCGGCCTGACCTACTCGGCGCTGAACGACGCGCACGCC 14541 Query 30938 AAGTTCGGCGACGCCTCCGGCCGCCTGGTTGCGCAGGTAATGAACGGCGTGACCTTCCAC 30997 ||||| |||||| |||| ||| | || ||| | || |||| |||| | | ||| Sbjct 14542 AAGTTTGGCGACAGCTCCAGCCTGATCGTGGCGAACGTGATGACCGGCCAGGTGTATCAC 14601 Query 30998 GACCTCATCGGGAAGAACCTCACCAACGCGCAGCAGCTGTTCCGTGCTGGCGACGTGACG 31057 | || ||||| ||||||| ||||||| ||||||||||||| ||||| ||| || Sbjct 14602 AAGCTGATCGGCCAGAACCTGGCCAACGCCCAGCAGCTGTTCCAGTATGGCGCCGTCACT 14661 Query 31058 ATCGTCGATATCCTCGGCAAAGCCGTCATCGTGACCGACTCCCCGGCGCTGTACTCGGCC 31117 | ||||| ||||| ||||| | || ||||||||||| | ||||| |||||| ||| Sbjct 14662 GTGGTCGACATCCTGGGCAAGACGGTGGTCGTGACCGACGCACCGGCCCTGTAC---GCC 14718 Query 31118 GCGGTCGCCACTCCGGCTGCACCTGCCAAGCAGCGCGTGCTGTCCCTGGCCGACGGCGCT 31177 || | |||||| |||||| || || |||||| ||||| || ||||| Sbjct 14719 ACG---GGCACTCC----CAACCTGC--AGAAG---GTGCTGGGCCTGGTCGCGGGCGCC 14766 Query 31178 GGCATGGTGATGGA--CGGTTCCGACCTGATCACCAATATCGAGACCAGCAACGGTAAGG 31235 | | ||||| || ||| | ||| | |||||||| ||||| |||| |||||| |||| Sbjct 14767 GCGACGGTGACCGATGCGGGT--GACGTCATCACCAACATCGACACCACCAACGGCAAGG 14824 Query 31236 GCCGCATCGAGACGACCTTCCAGGCCGACTATTCCTTCGGTCTGGCGTTGCGCGGCTATA 31295 |||||||| || || | |||| || || ||||||| |||| || ||||| | Sbjct 14825 AGCGCATCGAAACCACGATGCAGGTGGATTACACCTTCGGCCTGGGCCTGAAGGGCTACA 14884 Query 31296 CCTGGGACACCGCCAACGGTGGCAAGTCTCCGACCGACGCCGAGCTGGCCACCGGTTCCA 31355 |||||||| |||||||| |||||||| ||||||||||||||||||||||| || ||| Sbjct 14885 CCTGGGACGAGGCCAACGGCGGCAAGTCGCCGACCGACGCCGAGCTGGCCACGGGCACCA 14944 Query 31356 ACTGGGATCTGGTCGCCAACTCTATCAAGGCTTCGGCCGGCGTCATCACCATCGGCGACG 31415 ||||||| ||| |||| | || || |||| || |||||| | ||||| |||| Sbjct 14945 ACTGGGACAAGGTGGCCACCGACATTAAACACACGGCTGGGGTCATCGCTATCGGAGACG 15004 Query 31416 CTTCCCAGTAA 31426 ||||| ||||| Sbjct 15005 CTTCCAAGTAA 15015 >seq447 Length=48793 Score = 302 bits (334), Expect = 1e-77 Identities = 636/935 (68%), Gaps = 45/935 (5%) Strand=Plus/Plus Query 30443 ATGGCCCTTTCTGATATGAAGGTATTCAACCAATACCTCAAAGCTGCAACTATCGAGACG 30502 ||| |||| || | ||| |||| |||||| ||||| ||| | || ||| |||||||| Sbjct 18400 ATGTCCCTGTCGCAAATGCAGGTTTTCAACGAATACATCATGCCAGCGACTCTCGAGACG 18459 Query 30503 CTGAACCAGGATGTCGAGAAGTTCAACGCCGCCTCGGCCG--GCGCCATCCGCCTGACCA 30560 ||| | ||| || ||| ||||||||||| |||| |||| ||| ||| | Sbjct 18460 CTGGATCAGTATCTCGCCGCTTTCAACGCCGCAA--GCCGTGGCGCAATCGTGCTGTCTC 18517 Query 30561 CGCAGGGCATCGACGGCGACTTCCTGCAAGAATCCTTCTGGGCTGGCCTGCATGGC---- 30616 | | ||| || || |||||||| ||||| || |||| | | ||| |||| Sbjct 18518 CTGACGGCTTCACTGGTGACTTCCTCCAAGAGTCGTTCTTC-CAGACCT---TGGCCGCT 18573 Query 30617 GCCCAGCGTCGTGTCGATCGCTACGCCGCCAACGGCGCCCAGTCG--GCAACCGCGCTCT 30674 |||||||| || || ||||||||| | | |||| ||| |||| ||||||| || Sbjct 18574 GCCCAGCGCCGCGTGGATCGCTACAGCACGAACGCCGCT--GTCGCTGCAACCGATCTGA 18631 Query 30675 CCCAGAAGCAG--TACGACGCTGTCAAGGTGGCCGGTGGCTTTGGTCCGATCCTGTGGGA 30732 | || | || ||| || || ||||| ||||||||||| |||||||||| | || Sbjct 18632 CTGAGCTGAAGAATACTTCGGTG--AAGGTCGCCGGTGGCTTCGGTCCGATCCGCTACGA 18689 Query 30733 GCCCTCGCAGCTCTCCTGGATTCAGAAG--AGCCCGGAAGAGGCGCTGGAAGTCATCAGC 30790 ||| |||||| | | ||| | || | || | | |||| | |||||| ||| Sbjct 18690 GCCATCGCAGATGACTTGGCTGGAGCGTCCAACCGCGCA-AGGCA-TCGAAGTCGCCAGT 18747 Query 30791 CGCAACCTGTCCGAGGCAATCGTGGCG---GATCAGCTGAACACCGTAATCGCCGCCCTG 30847 ||| || || | |||| || | || ||||||||||| | |||||||||||| Sbjct 18748 CGCGC---GTTCGCTGAAATCCTGCTGAAGGACCAGCTGAACACAGCGATCGCCGCCCTG 18804 Query 30848 GTCGCTGCTATCAGCAACCAGGCCGCAGCGACCAACGACGTGTCGGCTACTGCCGGTGTT 30907 || || || |||| | ||||||||| ||| |||||| ||||||||||| || || | Sbjct 18805 GTTGCCGCGATCACCGCCCAGGCCGCCGCGGTCAACGATGTGTCGGCTACCGCTGGCATC 18864 Query 30908 ACCTATGCCGCCATCAACGCCGCGCACGCCAAGTTCGGCGACGCCTCCGGCCGCCTGGTT 30967 ||||| || | | | ||| ||| ||||| |||||||||||||| | |||||| Sbjct 18865 ACCTACGCTGGCCTGAACAACGCACACGCGAAGTTCGGCGACGCAAGCCAGAACCTGGTC 18924 Query 30968 GCGCAGGTAATGAACGGCGTGACCTTCCACGACCTCATCGGGAAGAACCTCACCAACGCG 31027 | ||||| ||| | ||| || || ||| | | | || ||||||| | ||| | Sbjct 18925 ACCCAGGTGATGCAGGGCACGAGCTATCACAAGTTGGTTGGCCAGAACCTGGCGAACCAG 18984 Query 31028 CAGCAGCTGTTCCGTGCTGGCGACGTGACGATCGTCGATATCCTCGGCAAAGCCGTCATC 31087 ||||||||||||| || ||| |||| | || || || |||||||| | | | Sbjct 18985 CAGCAGCTGTTCCAGGCCGGCAACGTCCGCGTGGTGGACATTCTCGGCAAGATCTCCGTT 19044 Query 31088 GTGACCGACTCCCCGGCGCTGTACTCGGCCGCGGTCGCCACTCCGGCTGCACCTGCCAAG 31147 ||||| || ||||||||||| | | | | || ||| ||| |||| Sbjct 19045 GTGACGGATGCCCCGGCGCTG-ATGCAGAC-----CGGCACCCCG---------AACAAG 19089 Query 31148 CAGCGCGTGCTGTCCCTGGCCGACGGCGCTGGCATGGTGATGGACGGTTCCGACCTGATC 31207 | | | |||||||||| | ||||||| | || ||||| |||| | ||| Sbjct 19090 GAAATCATCCTGTCCCTGGTGCAAGGCGCTGCGCTCGTTCACGACGGCCGCGACATCATC 19149 Query 31208 ACCAATATCGAGACCAGCAACGGTAAGGGCCGCATCGAGACGACCTTCCAGGCCGACTAT 31267 | ||| || |||| |||||| |||| || ||||| || || | || ||||||| Sbjct 19150 AGCAACGTCCAGACTGTCAACGGCAAGGAGCGTATCGAAACCACGCTGCAAACCGACTAC 19209 Query 31268 TCCTTCGGTCTGGCGTTGCGCGGCTATACCTGGGACACCGCCAACGGTGGCAAGTCTCCG 31327 |||||||| ||| || ||||| |||||||||||| ||| ||| |||||||| || Sbjct 19210 ACCTTCGGTTTGGGCCTGAAGGGCTACACCTGGGACACCACCACCGGCGGCAAGTCGCCT 19269 Query 31328 ACCGACGCCGAGCTGGCCACCGGTTCCAACTGGGA 31362 ||||||||||| ||||| |||||| |||||||||| Sbjct 19270 ACCGACGCCGAACTGGCGACCGGTACCAACTGGGA 19304 >seq846 Length=12855 Score = 208 bits (230), Expect = 2e-49 Identities = 313/446 (70%), Gaps = 33/446 (7%) Strand=Plus/Plus Query 6112 TTCTCGACGATCCGTTGCGCTTCGTCTTCGTCAAAGATGCCGGTGTAGCCAAAGGCGAGT 6171 || ||||| || || | ||||| || | |||| |||| || | | || ||||| || Sbjct 4615 TTTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGA 4674 Query 6172 CGGGCGCACTGGATCATGGCTTTGTGGCGCAGCATCCGCTTCGGATGGCTCTGCCAGGG- 6230 ||||| ||||| ||||||||||| || || | |||||| || ||||| |||||| || Sbjct 4675 CGGGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGT 4734 Query 6231 ----------------CT----GGGTGTTGC--GCTT-------GCACTCGGCCATCCAT 6261 || |||| ||| | || ||| || ||||||| Sbjct 4735 CCGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCAC 4794 Query 6262 TCGGTGACCTTGATTGGGTGATTGCGGTCCTTGCGATAGATGATGCAGGTGCATGACTCG 6321 ||||| || ||| || ||||||||||||||||| || || ||| ||||| || || Sbjct 4795 TCGGTAACGCAGATCGGATGATTGCGGTCCTTGCGGTAAATCCGGCATGTGCAGGATTCA 4854 Query 6322 TCGTCCTGCTGGAAGTCCATCCCATCGAACGCGCCATTTTCATTAATGATCCGCGACCAT 6381 | |||||||| |||||||| ||||| ||| |||||||| ||||| || ||||| Sbjct 4855 TTGTCCTGCTCAAAGTCCATACCATCAAACTGCTGGTTTTCATTGATGATGCGGGACCAG 4914 Query 6382 CCGTCCACGCCTACGACCGGCACGATGCC--TC-CCTTATCCGGGAAGGCATAGATCTCC 6438 || || ||||| || ||||| |||||||| || |||||| |||||||| || || || Sbjct 4915 CCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAAATTTCT 4974 Query 6439 TTCGTCCAGGGGTTCAGGCCGTACTGGTCAGCGACGATCAGGAGCGCCTGCATCTGCGCG 6498 |||||||| || || ||||||||||||| ||||||||||| | || | |||||| Sbjct 4975 TTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAGCAATGCGATGAACTGCGCA 5034 Query 6499 TCGCTGACTTGGCCCTTGAAGGCTGT 6524 |||||| | | ||| || || || || Sbjct 5035 TCGCTGGCATCGCCTTTAAATGCCGT 5060 >seq83 Length=313169 Score = 93.3 bits (102), Expect = 1e-14 Identities = 341/528 (65%), Gaps = 11/528 (2%) Strand=Plus/Minus Query 33448 GGCGATATCGTCGAAGTCACCTCAGGCTGGTC-GCGCTTGAATAGCCGCGTCGCTCGGGT 33506 ||||| ||||| ||| | || |||||| | ||||| || | |||| ||||| || | Sbjct 16076 GGCGACATCGTGGAAATGGTGTCGGGCTGGACCGCGCTGGA-TGGCCGTGTCGCCCGCGC 16018 Query 33507 CGCCAACGTGGCCGTCGACACCTTCGAGCTGGAAGGCATCAACACCACCTCGACCAACCT 33566 | | ||| || ||||| | | ||||||||||||| | || || ||||| | Sbjct 16017 GGACGCCGTCACCACCGACAGCCTGACGCTGGAAGGCATCGATACGACGGACACCAAGCG 15958 Query 33567 TTACCCGGCTGGCGGCGGCGCAGGATCGGTGCGCAAGGTCAGCACCTGGCAGCAAATCAC 33626 || || || ||| |||| || |||||| || |||| ||| || | Sbjct 15957 CTATCCCGCCGGCACGGGCGGTGGCAGCGTGCGCCGAATCCAAGACTGGACGCAGATTTC 15898 Query 33627 GCAGGTTCTGGAGTTCACCACGTCGGGTGGCGAGCAGCAGTTCGTTACCTACTCGTTCCT 33686 |||||| |||| | ||| ||| ||||| ||||||||| | ||| || ||||| Sbjct 15897 GCAGGTCATGGAATCGGCCAGCCAGGGCGGCGAACAGCAGTTCTACAACTATTCCTTCCT 15838 Query 33687 GGAAGAG---GATGTAGAGCACCAGATCCCGACC--GTCAAGAGCGCT-TCCAGCTTTGC 33740 |||||| | | || | ||||||||||||| | || |||| || | | | Sbjct 15837 GGAAGACACCGGCGACGAACGCCAGATCCCGACCACGCGCAGCGCGCGGTCGATCA---C 15781 Query 33741 CATGACCATCGGCGACGATGCCGCTCTGCCGTGGTACAGCATCCTGTCCGACGCTAACGA 33800 | |||| |||| |||||| | ||| |||||| ||| | ||| | ||| ||||| Sbjct 15780 CCTGACGATCGCCGACGACGACGCGCTGCCGCACTACCAGGTGCTGAAGGCCGCGAACGA 15721 Query 33801 CGACCGCATCCCGCGCGCCGTCTCCGTCGTGCTGCCTTCTGGCTCGGCGATCTACTACAA 33860 ||||||| ||||| || || || |||||| |||||||| ||||| | | Sbjct 15720 CGACCGCCAGCCGCGGGCGATCCGTTTCCAGCTGCCCAATGGCTCGGTCATCTATTTCCG 15661 Query 33861 CGGCTATGTGACGCTGAACAAGACCCCGACGCTCACCAAAAACGAGCTGATGGGCCTGCA 33920 || ||| || || | | | ||| || || |||||| ||||| ||| ||||| Sbjct 15660 CGCCTACGTATCGTTCAGCGAGATGCCCACCACCACCAAGAACGAAGCCATGACGCTGCA 15601 Query 33921 GAGCACAGTTTCGCTCACCTCAGAGCCAATGCGCTACTCGGCATAAGG 33968 | ||| | ||||| ||| | || | |||||| | || ||||| Sbjct 15600 GGTCACCCTGTCGCTGACCGGCGCCCCGACCCGCTACGCCGCGTAAGG 15553 >seq50 Length=107299 Score = 91.5 bits (100), Expect = 5e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 47781 GATGACGTGCTGGCGTTCGCCTTCGGTCGGCTGCTGCTATGGACCGATCCGAAGCCGCTG 47840 || |||||||||||| || | | ||||||||||| ||||| ||||||||| ||||| Sbjct 943 GACGACGTGCTGGCGGCCGGGGTGGCGCGGCTGCTGCTGTGGACAGATCCGAAGGCGCTG 1002 Query 47841 CCAAGCGAGCATGACGCGGCTGGCGGCTGGGCGCTATATGAGCGCACCTGGCGGCCCGGA 47900 || | || |||| | | |||||||||| || ||||||||||||||| || Sbjct 1003 CCGCCGGTCGGCGATGCGGACGCCAGCTGGGCGCTGTACCTGCGCACCTGGCGGCCGGGC 1062 Query 47901 AAACCTCATCCGGAGCGCTGGCC 47923 || || |||||| || |||||| Sbjct 1063 AAGCCCCATCCGCAGACCTGGCC 1085 >seq201 Length=34019 Score = 89.7 bits (98), Expect = 2e-13 Identities = 208/303 (69%), Gaps = 22/303 (7%) Strand=Plus/Plus Query 47630 CGGGCCGGCCCGCGGGCTGCTC-CAGTTCGAGCAGGGCGGCGGCGTGCGTGGCGTGCTGA 47688 ||| ||||| ||||| || || |||||||||||||||||||||||||| || ||| ||| Sbjct 2201 CGGCCCGGCGCGCGG-CTTCTGGCAGTTCGAGCAGGGCGGCGGCGTGCGCGGGGTGTTGA 2259 Query 47689 ATCACCCATCGAGCCGCGACCATGCCCTCCGAGTGTGTGCGGCGCGCGG---AGTTGCGC 47745 || || | |||| ||| ||| || || || ||| ||||| || ||| Sbjct 2260 CGCATCCGGCTTGCCGGGACGCCGCCAGCCAGGTCTGCCTGGCCCGCGGGGTGGTCGCGA 2319 Query 47746 CGGAGCCGGCTGCTGTGTGGGCTGCTCTTGAGCGTGATGACGTGCTGGCGTTCGCCTTCG 47805 | | |||| | | ||| | || | || || | || |||||||||||| || || | Sbjct 2320 CCGCGCCGTC-GGTGTACGCGCGG--CTGGACCAGGACGACGTGCTGGCGGCGGCGTTTG 2376 Query 47806 GTCGGCTGCTGCTATGGACCGATCCGAAGCC--GCTGCCAAGCGAGCAT----GACG-CG 47858 || ||| |||| ||| | || ||| ||| |||| || |||| |||| || Sbjct 2377 CGCGCCTGTTGCTGTGGTCGGACCCG--GCCAGTCTGC----CGCGCATCGGCGACGCCG 2430 Query 47859 GCTGGCGGCTGGGCGCTATATGAGCGCACCTGGCGGCCCGGAAAACCTCATCCGGAGCGC 47918 || | | ||||||||| || |||||||||||||||||| || || | | ||| || Sbjct 2431 ACTCG-GCCTGGGCGCTGTACCTGCGCACCTGGCGGCCCGGCAAGCCCAAGCGGGATAGC 2489 Query 47919 TGG 47921 ||| Sbjct 2490 TGG 2492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155590517108472