Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5011 96.9 3e-15 seq250 93.3 4e-14 >seq5011 Length=2423 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAA 6605 |||||| ||||| |||| ||||||||| |||| ||| || || | || || || Sbjct 368 GCTCGAAATGGTTGGCATAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCT 427 Query 6606 CCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG 6665 || ||| ||| || || | |||| || ||||| || || || || ||||||| Sbjct 428 GCAGACCCGTGACCTGCGCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACG 487 Query 6666 GCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 |||| || | || || | || || || |||||||||||||| |||| || | | Sbjct 488 GCACGCCGAGAAAGATATCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGG 547 Query 6726 CGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 | |||||||| ||| | ||| |||||| || || |||||||| Sbjct 548 CCACGTAGAACTGGAACAGGCAGTGGCAGGGCGGCAGCGCCAT 590 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCC 34636 |||||||| || || |||||| ||| | ||| |||||||| || | || |||| ||| Sbjct 590 ATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAGCTTTCC 531 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 ||||||||||| || || || | || || | || ||||||||||| || || Sbjct 530 TGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCC 471 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTG 34756 || || ||||| || |||| | || || ||| ||| || || || || | || Sbjct 470 TATGCCCTGCTGACCCTCATGGTGGCGCAGGTCACGGGTCTGCAGCCGGGTGATTTCGTT 411 Query 34757 CATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGC 34799 || ||| |||| ||||||||| |||| ||||| |||||| Sbjct 410 CACACGCTGGGCGATGCGCATCTCTATGCCAACCATTTCGAGC 368 >seq250 Length=59172 Score = 93.3 bits (102), Expect = 4e-14 Identities = 190/280 (68%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTC-CCCAGGAACCAACC 6611 |||||| ||| | |||||| || |||| |||||||| | || |||| | ||| || Sbjct 46325 GTGGTTGGAGTACAGATGCGCGTCGCCCAGGGTATGCACGAAGTCGCCCACGC-CCAGCC 46383 Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671 | | | || || | ||||| |||||||| ||||| || || |||||||||||||| | Sbjct 46384 CGGTGGCCTGCGCCACCATGTGGGTGAGCAGTGCGTAGCTGGCGATGTTGAACGGCACGC 46443 Query 6672 CTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGT 6731 | | ||||| || || || || | ||||||| |||| || | | | |||| Sbjct 46444 CCAGGAAGATGTCGCCGCTGCGCTGGTACAACTGGCAGCTGAGCTTGCCGTCCACCACGT 46503 Query 6732 AGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCC 6791 |||| ||| | ||| ||||||| || | ||||||| | | || || | ||||| Sbjct 46504 AGAACTGGAACAGGTTGTGGCAGGGCATCAACGCCATCTGCGACAGCTCGCCCACGTTCC 46563 Query 6792 ACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTT 6831 | |||| | ||| | || | ||| ||||| ||||| Sbjct 46564 AGGCGCTGACCACCAGCCGCCGCGAATCGGGGTTGCGCTT 46603 Score = 93.3 bits (102), Expect = 4e-14 Identities = 190/280 (68%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 34514 AAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCT 34573 ||||| ||||| ||| | || | ||| | |||| |||||| | || || | Sbjct 46603 AAGCGCAACCCCGATTCGCGGCGGCTGGTGGTCAGCGCCTGGAACGTGGGCGAGCTGTCG 46544 Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633 | ||||||| | || ||||||| ||| | ||| |||||||| | | | || |||| Sbjct 46543 CAGATGGCGTTGATGCCCTGCCACAACCTGTTCCAGTTCTACGTGGTGGACGGCAAGCTC 46484 Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693 ||||||| | || || || || ||||| | || |||||||||||||| || Sbjct 46483 AGCTGCCAGTTGTACCAGCGCAGCGGCGACATCTTCCTGGGCGTGCCGTTCAACATCGCC 46424 Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG-GAGCT 34752 || ||||| |||||||| ||||| | || || | | ||| ||| | |||| || | Sbjct 46423 AGCTACGCACTGCTCACCCACATGGTGGCGCAGGCCACCGGGCTGG-GCGTGGGCGACTT 46365 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCAC 34792 |||||||| |||| || |||||| | ||| |||||| Sbjct 46364 CGTGCATACCCTGGGCGACGCGCATCTGTACTCCAACCAC 46325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448204534927440