Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1971 188 2e-42 seq374 185 2e-41 seq1210 179 9e-40 seq426 179 9e-40 seq396 174 4e-38 seq1077 163 7e-35 >seq1971 Length=9940 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||||||||| || |||||||| || || | ||| || | || || Sbjct 5038 AGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 4979 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || || || |||||||| || || | ||| ||||||||| Sbjct 4978 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC 4919 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| |||| ||||||||||||||||| ||| Sbjct 4918 TGGATCTTGGTCTTGACGTTCTCGATGGTGTCGGAGCCCTCAACCTCGAGAGTGATGGTC 4859 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 4858 TTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 4827 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || |||||||| || |||||||| ||||||| || Sbjct 4367 TCCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAG 4308 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || |||||||| || ||||| || || || |||||||| || || | Sbjct 4307 GGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGAT 4248 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||||||||||||||||| || ||||| ||||||||||| |||| || ||||| Sbjct 4247 GCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCGACCTC 4188 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 4187 GAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4143 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||||||||||||||| || |||||||| || || | || Sbjct 4595 TCCACGGAGACGGAGGACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAG 4536 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || || |||||||| || ||||| || || || ||||| || || | Sbjct 4535 GGTGCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGAT 4476 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || ||||| ||||||||||| |||| |||||||| Sbjct 4475 GCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCGATGGTGTCCGAGCCCTCAACCTC 4416 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| || || || ||||| || || | |||||| Sbjct 4415 GAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4371 Score = 167 bits (184), Expect = 5e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| || || || || ||||| || |||||||| || |||| || Sbjct 4823 TCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAG 4764 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || ||||||||||| ||||| || || || |||||||| || |||| Sbjct 4763 GGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGTTGGTCGGGGGGAAT 4704 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || ||||| || |||||||| |||| ||| ||||| Sbjct 4703 GCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTGTCGGAGCCTTCGACCTC 4644 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| || || | ||||| || || | ||||| Sbjct 4643 GAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATTTGCAT 4599 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| || || || || ||||| || |||||||| || || | || Sbjct 4139 TCCACGGAGACGGAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAG 4080 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || |||||||| || ||||| || || || |||||||| || || | Sbjct 4079 GGTGCGGCCGTCCTCAAGCTGCTTTCCAGCGAAAATGAGACGCTGTTGGTCGGGGGGGAT 4020 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||||||||| || ||||| || ||||| || || | || ||||| Sbjct 4019 TCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTCTCAATGGTATCGGATCCCTCCACCTC 3960 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || || || ||||| || || | ||||| Sbjct 3959 AAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3915 >seq374 Length=102525 Score = 185 bits (204), Expect = 2e-41 Identities = 176/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| ||||||||||| || |||||||| ||||| | ||| Sbjct 645 TCCACGGAGGCGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGAAAG 586 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || || || ||||||||||| || ||||| || || |||||||| || |||| Sbjct 585 AGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGGTCGGGGGGAAT 526 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||||||||||||| || ||||| || ||||| || |||| |||||||| Sbjct 525 ACCCTCCTTGTCCTGGATCTTTGTCTTGACGTTCTCAATGGTATCGGAGCCCTCAACCTC 466 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||| || ||||| || |||||||||||||| || | ||||| Sbjct 465 CAAAGTAATGGTCTTGCCAGTGAGAGTCTTTACGAAAATTTGCAT 421 Score = 181 bits (200), Expect = 2e-40 Identities = 175/225 (78%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||||||||| ||||||||||| || || ||||| ||||| | ||| Sbjct 873 TCCACGGAGACGGAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAATCGGAAAG 814 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || || || ||||||||||| || ||||| || || ||||| || || |||| Sbjct 813 AGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGTTGATCGGGGGGAAT 754 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||| || ||||| || ||||| || |||||||| |||| |||||||| Sbjct 753 GCCCTCCTTGTCTTGAATCTTAGTCTTGACGTTCTCAATGGTGTCCGAGCCCTCAACCTC 694 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| |||||||| ||||| |||||||| || | ||||| Sbjct 693 CAGAGTGATAGTCTTTCCAGTGAGGGTCTTTACGAAAATTTGCAT 649 Score = 167 bits (184), Expect = 5e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| ||||||||||| || ||||| || ||||||| || Sbjct 417 TCCACGGAGGCGAAGGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCCGAGAG 358 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | || || || || ||||| || ||||| || || || || ||||| || || | Sbjct 357 GGTGCGGCCGTCCTCAAGTTGCTTTCCAGCGAAAATTAGACGCTGCTGGTCGGGGGGGAT 298 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || ||||| || ||||| || |||| ||| || || Sbjct 297 GCCCTCCTTGTCCTGGATCTTAGTCTTTACGTTCTCAATGGTATCCGAGCCTTCGACTTC 238 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| ||||| || ||||| ||||| ||||| | ||||| Sbjct 237 GAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 193 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||||| || || || |||||||| || || |||||||| || | ||| Sbjct 189 TCCACGAAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGAAAG 130 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| || || |||||||| ||||| || || || || ||||| || |||| Sbjct 129 AGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCGGGGGGAAT 70 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || ||||| || || ||||| |||| ||| || || Sbjct 69 GCCCTCCTTGTCCTGGATCTTAGTCTTTACGTTCTCAATAGTGTCGGAGCCTTCGACTTC 10 Query 211070 GAGAGTGAT 211078 || || || Sbjct 9 CAGGGTAAT 1 >seq1210 Length=15033 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || |||||||| || |||||||| || |||| ||| || | || || Sbjct 12708 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 12767 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || |||||||| || || | ||| ||||||||| Sbjct 12768 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC 12827 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || | |||||||| || ||||| ||| Sbjct 12828 TGGATCTTGGCCTTGACGTTCTCGATCGTGTCCGATCCCTCAACCTCAAGGGTGATGGTC 12887 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||||||||| | ||||| Sbjct 12888 TTGCCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 >seq426 Length=101737 Score = 179 bits (198), Expect = 9e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| ||||||||||| || || || || ||||| | ||| Sbjct 62 TCCACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGAATATTGTAATCAGAAAG 121 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || || |||||||| ||||| || || || || ||||||||||||| Sbjct 122 GGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATTAGACGCTGCTGGTCAGGAGGAAT 181 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||| || ||||| || || |||||||| || ||||| | |||||||| Sbjct 182 ACCCTCCTTGTCTTGAATCTTAGTCTTGACATTTTCGATAGTATCAGAACCCTCAACCTC 241 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 || ||||| ||||| || || |||||||||||||| | |||||| || Sbjct 242 AAGGGTGATGGTCTTGCCAGTTAGAGTCTTTACAAAGATTTGCATTGTA 290 >seq396 Length=82706 Score = 174 bits (192), Expect = 4e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| ||||| ||||||||||| || ||||| || ||||| | ||| Sbjct 62 TCCACGGAGACGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGAAAG 121 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || || |||||||| ||||| || || || || ||||||||||||| Sbjct 122 GGTGCGGCCATCCTCAAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAAT 181 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||| || ||||| || || |||||||| || || || | |||||||| Sbjct 182 ACCCTCCTTGTCTTGAATCTTAGTCTTGACATTTTCGATAGTATCGGAACCCTCAACCTC 241 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTA 211118 || ||||| ||||| || || || ||||||||||| | |||||| || Sbjct 242 TAGGGTGATGGTCTTGCCAGTTAGGGTCTTTACAAAGATTTGCATTGTA 290 >seq1077 Length=16265 Score = 163 bits (180), Expect = 7e-35 Identities = 147/185 (79%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || |||| |||||| | || || Sbjct 5430 AGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 5371 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| |||||||| || || | ||| ||||||||| Sbjct 5370 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCC 5311 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| |||| ||||||||||| ||||| ||| Sbjct 5310 TGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAGCCCTCAACCTCGAGGGTGATGGTC 5251 Query 211083 TTTCC 211087 || || Sbjct 5250 TTACC 5246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158998627165355