Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1210 89.7 4e-13 seq1971 84.2 2e-11 seq374 82.4 7e-11 >seq1210 Length=15033 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| || || || || || || | ||| || || |||| || Sbjct 12710 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTC 12769 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||| ||||||| ||| | | ||| |||||| Sbjct 12770 GAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCGGGGGGGATTCCCTCCTTGTCCTG 12829 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC-GCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| || | | ||| || | || ||| || || | ||||| | | Sbjct 12830 GATCTTGGCCTTGACGTTCTCGATCGTGTCCGATCC-CTCAACCTCAAGGGTGATGGTCT 12888 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || |||||||||||||| Sbjct 12889 TGCCTGTGAGAGTCTTTACAAAGATTTGCAT 12919 >seq1971 Length=9940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || |||| || || || |||| ||||| || Sbjct 4573 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGC 4514 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| || |||||||||||||||| ||| | || ||| |||||| ||| || Sbjct 4513 TTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 4454 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACTTTTTCCC 39258 |||| || | | || || ||| ||| || || | ||||| | || || Sbjct 4453 GTCTTGACGTTCTCGATGGTGTC---CGAGCCCTCAACCTCGAGGGTGATGGTCTTGCCG 4397 Query 39259 GTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || ||||| ||||| Sbjct 4396 GTCAGGGTCTTGACGAAGATCTGCAT 4371 >seq374 Length=102525 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || ||||| ||||| | || || || |||| ||||| || Sbjct 395 TGGAGAGTGGACTCCTTCTGGATATTGTAATCCGAGAGGGTGCGGCCGTCCTCAAGTTGC 336 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || |||||||||||||||| ||| | || ||| |||||| ||| || Sbjct 335 TTTCCAGCGAAAATTAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTA 276 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGAC-TCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | || | | ||||| | | | || || || | ||||| | || || || Sbjct 275 GTCTTTACGTTCTCAATGGTATC-CGAGCCTTCGACTTCGAGAGTGATGGTCTTGCCAGT 217 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || |||||||||||||| Sbjct 216 GAGGGTCTTGACAAAGATTTGCAT 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429491537256551