Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq374 134 9e-27 seq1971 102 6e-17 >seq374 Length=102525 Score = 134 bits (148), Expect = 9e-27 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| ||||| || |||||||| || ||||| | || Sbjct 649 ATGCAAATTTTCGTAAAGACCCTCACTGGAAAGACTATCACTCTGGAGGTTGAGGGCTCG 708 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || || || | || ||||| || || | || || ||||| Sbjct 709 GACACCATTGAGAACGTCAAGACTAAGA-TTCAAGACAAGGAGGGCATTCCCCCCGATCA 767 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||||||||| || || || |||| |||||| | ||||||||| Sbjct 768 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGATTACAA 827 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 828 CATTCAGAAGGAGTCCAC 845 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| || || || || ||| | || ||||| | | Sbjct 421 ATGCAAATTTTCGTAAAGACTCTCACTGGCAAGACCATTACTTTGGAGGTTGAGGGCTCC 480 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| || | || ||||| | | ||||| || ||| | || || || || Sbjct 481 GATACCATTGAGAACGTCAAGACAAAGA-TCCAGGACAAGGAGGGTATTCCCCCCGACCA 539 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||||||||| || || || |||| |||||| | |||||||| Sbjct 540 ACAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGATTACAA 599 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 600 CATCCAGAAGGAGTCCAC 617 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| || || || |||||||||||||| || | || Sbjct 193 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTCGAAGGCTCG 252 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | |||| || || ||||| || || | || || || || Sbjct 253 GATACCATTGAGAACGTAAAGACTAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 312 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| || || || || ||||| || |||| ||||| | |||||||| Sbjct 313 CAGCGTCTAATTTTCGCTGGAAAGCAACTTGAGGACGGCCGCACCCTCTCGGATTACAAT 372 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 373 ATCCAGAAGGAGTCCAC 389 >seq1971 Length=9940 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| ||||| | || Sbjct 4371 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGGGCTCG 4430 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | | ||||| || || | || || || || Sbjct 4431 GACACCATCGAGAACGTCAAGACCAAGA-TCCAGGACAAGGAGGGCATCCCCCCCGACCA 4489 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| ||||| || |||| ||||| | ||| ||||| Sbjct 4490 GCAGCGTCTCATCTTTGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAA 4549 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 4550 CATCCAGAAGGAGTCCAC 4567 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || ||||||||||| ||||| | | Sbjct 4827 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAGGTTGAGGGCTCC 4886 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || || ||||| || || | || || || || Sbjct 4887 GACACCATCGAGAACGTCAAGAC-CAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCA 4945 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||| || || || |||| |||||| | ||| ||||| Sbjct 4946 ACAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAA 5005 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 5006 CATCCAGAAGGAGTCCAC 5023 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||| || || | || Sbjct 4143 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGGGCTCG 4202 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | | ||||| ||||| | || || || || Sbjct 4203 GACACCATCGAGAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGCATCCCCCCCGACCA 4261 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || || || || || || |||| ||||| | |||||||| Sbjct 4262 ACAGCGTCTCATTTTCGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCGGATTACAA 4321 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 4322 CATCCAGAAGGAGTCCAC 4339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337967058006116