Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030696.1 Length=93139 Score E Sequences producing significant alignments: (Bits) Value seq3473 219 3e-52 seq1940 206 2e-48 seq1272 113 3e-20 seq46 96.9 2e-15 seq90 95.1 7e-15 >seq3473 Length=4258 Score = 219 bits (242), Expect = 3e-52 Identities = 703/1086 (65%), Gaps = 77/1086 (7%) Strand=Plus/Plus Query 47475 TGCCGTTCATTCACCCTCACGTCGCCCTGATGCCGGATGCACACGGCGGCAAAGGATCTG 47534 |||||||||| ||||| ||| | || ||||||||||| || ||| |||||| || | Sbjct 1581 TGCCGTTCATCCACCCGCACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGA 1640 Query 47535 CCGTTGGCACGGTGATTCCCACCGTGGATGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 47594 | || ||| |||| || || || | | || | ||||| ||||| |||||||| |||| Sbjct 1641 CGGTCGGCTCGGTCATCCCGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACA 1700 Query 47595 TCGGCTGCGGCATGATCGGCG-TCGAAACCTGGGTGCA-GAAGAGCGACATCG-CAGACC 47651 |||||||||| ||||||| || ||| | | || || || ||||||| ||| | | | Sbjct 1701 TCGGCTGCGGGATGATCGCCGTTCGTA--CGCCGTTCACGAGGAGCGACGTCGACGGTCG 1758 Query 47652 TCAGCCTCGCGGACCTGCGTGAGCGCGTCGAGATCGCCATCCCGCTCTCCCCAGGGAACT 47711 || | ||||| ||||| || |||| ||||| ||||||||| || || | || | Sbjct 1759 TC-GGCTCGCCGACCTCCGGGAGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGT 1817 Query 47712 ACAACGTCGATGGGCGCTGGGCCGAGCACACCGAGG---GGCGCATCGCACGCCTGGAGG 47768 ||||| ||| || || | ||||| || ||||||| | |||||| Sbjct 1818 ACAAC---------CGCAAGGTCGTGGCCACCGCGGAACCGCGCATCACCGAGCTGGAGC 1868 Query 47769 CAATGGCCGAGGAGAAGGGGGTCGACCTCAAGCACT-CGCC--GAAGTGGCGCGAGCAGC 47825 | |||||| |||| || |||||| ||| | |||| ||| ||||| |||| Sbjct 1869 AGCTCGCCGAGAAGAACGGCTTCGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGT 1928 Query 47826 TGGGTTCACTGGGTGGTGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGTACAACCAGG 47885 |||| | || ||| |||||||||||||||||| ||| || ||| || || Sbjct 1929 TGGGCACGCTCGGTTCAGGCAACCACTTCATCGAGGTGT-CG-GTCGATG-------AG- 1978 Query 47886 GCCCGGGTGAGATCTGGCTGTTCCTCCACTCGGGGTCGCGCGGCGTCGGCAACAAGATCG 47945 | | | | ||||||||||||| |||||||| ||||| ||||||||||||||||||| Sbjct 1979 --CTCGATCGGGTCTGGCTGTTCCTGCACTCGGGCTCGCGAGGCGTCGGCAACAAGATCG 2036 Query 47946 CGCAGAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATCCAGCTCGCCA 48005 | | | || ||||| ||| | || || Sbjct 2037 CCGGGCACCACATCGCCGTCGCCCAGCGGCTGGCGAGGCAGTGGTGGATCGACCTTCCCG 2096 Query 48006 ACCCCGACCTGGCCTACCTGCCGTCCGGGACCGAC--GAATTCGGCGACTACATTCGCGA 48063 ||||||||||||| |||||| ||| || | || || ||| | |||||| || || Sbjct 2097 ACCCCGACCTGGCATACCTG--GTCGAGGGCACACCGGAGTTCACCCGCTACATCCGGGA 2154 Query 48064 GCTCCGGTGGGCACAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACCGTTTCGT 48123 ||| |||||||| ||| |||||||| |||||||| || |||||||| || ||| Sbjct 2155 GCTGCGGTGGGCCCAGCACTTCGCGCTGCTGAACCGGGAGGAGATGATGGATCG---CGT 2211 Query 48124 CCATGTGTTCACCCGGTGGCTCGAGTACTCCGATGCCGTCGAATTCGACGAGCTCGGTCG 48183 | | | | |||| | |||| ||| ||| | | | |||| Sbjct 2212 C-----ATCCGGCAGGTGTC-GGAGT--TCC-------TCGGA-------ACCCCGGT-- 2247 Query 48184 CGACGTCGAACTCCGGCGTATCAATTGTCACCACAACTACACCGAGCGGGTCGAGATCGC 48243 || ||||| ||| ||||| || |||||||||| ||||||| || || | Sbjct 2248 ---CGACGAACAGGAGCGCATCAACTGCCACCACAACTTCACCGAGTCGGAGAAGCACTA 2304 Query 48244 CGGCAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGG 48303 ||| ||| | |||||| | | || ||||| || ||| | || || |||||| || Sbjct 2305 CGGGAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTCGACCGGG 2364 Query 48304 ACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTC 48363 || |||||||| || ||||| ||| || || || || | || || | | | Sbjct 2365 CCTCATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGT-----GGAAGGGCTCGGCGAC 2419 Query 48364 CGGC-----CTCTTCTCTGCGCCCCATGGTGCCGGCCGTCAGTATTCGCGCACCCAGGCC 48418 | || || ||| | || || |||||||| || |||| || ||| | ||| Sbjct 2420 CCGCAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCTCGGCGGCG 2479 Query 48419 AAGAAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAATACCGCCAC 48478 | | ||||| | || | || || |||| ||||||||| | ||| || Sbjct 2480 CGGCGGACCTTCACGCACGACCAGCTGCGAGAGGCGATGACGGGCATCGAGTTCCGTGAC 2539 Query 48479 GGCGAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGGAA 48538 ||| | | ||||||||||||||| | || |||||| |||||||||||||||| Sbjct 2540 ACCGATGCCTTCATCGACGAGATCCCGCAGGCGTACAAGCCGATCGACCAGGTGATGGCG 2599 Query 48539 GATGCC 48544 |||||| Sbjct 2600 GATGCC 2605 >seq1940 Length=14353 Score = 206 bits (228), Expect = 2e-48 Identities = 254/339 (75%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 71940 CGACACCGTGATCACCGTGATCGGAAATCTGACCGCCGATCCCGAACTGCGCTTCACCCC 71999 ||| ||||| ||||||||| | ||||| || || ||||| ||||| ||||||| ||| | Sbjct 12929 CGAAACCGTCATCACCGTGGTGGGAAACCTCACGGCCGACCCCGAGCTGCGCTACACGCA 12870 Query 72000 CT-CGGGCGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTTCGACAA-G 72057 ||||| |||||| || ||||||||| ||||| || || ||| |||||||| | Sbjct 12869 GAACGGGCT-GCCGGTGGCGAACTTCACCATCGCATCGACGCCTCGGAACTTCGACCGTG 12811 Query 72058 CAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACA-TCTGGCGCGA 72116 | | | || ||||||||||||| ||| ||||| ||||| || |||| | |||||||||| Sbjct 12810 CCG-CGAATGAGTGGAAGGACGGCGATGCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGA 12753 Query 72117 GCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCG 72176 | |||||| |||| | | ||| || | ||||||||||||||||||| ||||| || Sbjct 12752 GTTCGCCGAGCACGTGGCGGGTTCGTTGACGAAGGGCATGCGCGTCATCGCGCAGGGCCG 12693 Query 72177 CCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGA 72236 || |||||| |||| || || ||| | | || || | |||||||| || Sbjct 12692 TCTGCGTCAGCGCTCCTACCAGGACCGCGAGGGCAACCAGCGCACCGCGATCGAGCTGGA 12633 Query 72237 GGTCGAGGAGATCGGCCCCGCACTGCGGTACGCCACCGC 72275 |||||| |||||||||||| | || |||||||| ||||| Sbjct 12632 GGTCGACGAGATCGGCCCCTCGCTCCGGTACGCGACCGC 12594 >seq1272 Length=12228 Score = 113 bits (124), Expect = 3e-20 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 43058 TCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGA-AGGAA 43116 ||||||| ||||| | || ||||| |||||| | |||||||||||||| ||| | | Sbjct 9649 TCGACGCCGACCCCGAGGTCGACGTGATCATCATCGCCCGCGGCGGCGG--CGACCCGCA 9706 Query 43117 GAC-CTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGC-GTCTGCAACCC 43174 ||| || ||| | ||||||| ||||| || || | ||| |||| | |||| Sbjct 9707 GACGCTGCTCGGCTTCAGCGACGAGAAGCTGGTGCGAGCGGTCGCCGCGGTCT-CCACCC 9765 Query 43175 CGGTTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACC 43234 |||| ||| |||||| || |||||||| || | ||||| |||||| ||| | || | Sbjct 9766 CGGTGGTGAGTGCGATCGGGCACGAGAACGACCACCCGCTGCTCGACGACGTGGCCGATC 9825 Query 43235 TTCGAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACGT 43283 | || || | || ||||| || || |||||||| ||||| |||||||| Sbjct 9826 TGCGCGCCTCGACCCCGACCGACGCCGCGAAACGCGTCGTGCCCGACGT 9874 >seq46 Length=239904 Score = 96.9 bits (106), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 47504 ATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTTGGCACGGTGATTCCCACCGTGGAT 47563 |||||||| | ||| ||||| || | | || || |||||||||| ||| | | Sbjct 145132 ATGCCGGACGTGCACTACGGCATCGGTGCCACGGTGGGTTCGGTGATTCCGACCATCAAG 145073 Query 47564 GCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATGATCGGCGT 47616 ||||||||||||||||| || |||||||||||||||||||||||||| ||||| Sbjct 145072 GCCGTGATCCCGGCCGCCGTGGGCGTGGACATCGGCTGCGGCATGAT-GGCGT 145021 Score = 87.8 bits (96), Expect = 1e-12 Identities = 173/248 (70%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 48319 CATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGCCTCTTCT-CTG 48377 ||||||| ||||| ||| |||| |||||||| || || | || || | ||| Sbjct 144335 CATGGGCGCCAAGAGCTACATCGTGCGCGGCAAGGGCAACCCGGAAAGCTTCATGAGCTG 144276 Query 48378 CGCCCCATGGTGCCGGCCGTCAGTATTCGC-GCACCCAGGCCAAGAAGCTGTTCACCCTG 48436 | || | || |||||||| || || || ||||| ||||||||||||||| ||| || Sbjct 144275 CAGCC-ACGGCGCCGGCCGCAAG-ATGAGCCGCACCAAGGCCAAGAAGCTGTACACGGTG 144218 Query 48437 GATGACC---TCGCCGACCGAATGAAGGGCATCGAATACCGCCACGGCGAAGAGTGGATC 48493 | |||| | |||| ||| ||||| | | |||| |||| | | || | |||| Sbjct 144217 GCCGACCAGGTGGCCG--CGACCGAAGG-CGTGGAATGCCGCAAGGACGCCAACGTGATC 144161 Query 48494 GACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGGAAGATGCCAAAGACCTG 48553 |||||||||||| || ||||||||||||||| |||||| | | | |||||| Sbjct 144160 GACGAGATCCCGATGGCGTACAAGGACATCGACGCCGTGATGCAGGCGCAGCAGGACCTG 144101 Query 48554 GTCGAAGT 48561 || ||||| Sbjct 144100 GTGGAAGT 144093 >seq90 Length=95466 Score = 95.1 bits (104), Expect = 7e-15 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 47502 TGATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTTGGCACGGTGATTCCCACCGTGG 47561 |||||||||| | |||| |||||||| | |||| ||| ||||||| || ||| | Sbjct 70131 TGATGCCGGACGTGCACGTAGGCAAAGGGGCCACCGTGGGCTCGGTGATCCCTACCCGCG 70072 Query 47562 ATGCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATG 47608 || | || |||||||||||||||||||||||||||||||||||| Sbjct 70071 GCGCGATCATTCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATG 70025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297882503695700