Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5011 87.8 1e-12 seq250 82.4 6e-11 >seq5011 Length=2423 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27163 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 27222 |||| || || || ||||| ||||| || || || ||||| | || || ||||| || Sbjct 385 TAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCTGCAGACCCGTGACCTGC 444 Query 27223 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 27282 |||| |||| || || || | ||| ||||| || || || || ||||| || Sbjct 445 GCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACGGCACGCCGAGAAAGATA 504 Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACAT 27342 || | || | |||||||||||| || || |||| ||| ||| ||||| ||||| | Sbjct 505 TCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGGCCACGTAGAACTGGAAC 564 Query 27343 ATGGCGTGGCACGGAGGAAGAGCCAT 27368 | | |||||| || || || ||||| Sbjct 565 AGGCAGTGGCAGGGCGGCAGCGCCAT 590 >seq250 Length=59172 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27169 TGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 27228 || ||||| |||||||| || || || || ||| | ||||||||| | || |||| | Sbjct 46341 TGCGCGTCGCCCAGGGTATGCACGAAGTCGCCCACGCCCAGCCCGGTGGCCTGCGCCACC 46400 Query 27229 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 27288 |||| ||||| || | ||||||||||||||| || || || || || ||||| || Sbjct 46401 ATGTGGGTGAGCAGTGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGAAGATGTCGCCG 46460 Query 27289 GACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCG 27348 | |||||| | ||| || ||||| || || ||||| ||||| | | | | Sbjct 46461 CTGCGCTGGTACAACTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTTG 46520 Query 27349 TGGCACGG 27356 ||||| || Sbjct 46521 TGGCAGGG 46528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369460693708337