Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030901.1 Length=92618 Score E Sequences producing significant alignments: (Bits) Value seq3473 219 2e-52 seq1940 212 4e-50 seq1272 113 3e-20 seq90 95.1 7e-15 seq46 87.8 1e-12 >seq3473 Length=4258 Score = 219 bits (242), Expect = 2e-52 Identities = 704/1089 (65%), Gaps = 83/1089 (8%) Strand=Plus/Plus Query 46806 TGCCGTTCATCCACCCTCACGTCGCTCTGATGCCGGATGCACACGGCGGCAAAGGATCTG 46865 |||||||||||||||| ||| | || ||||||||||| || ||| |||||| || | Sbjct 1581 TGCCGTTCATCCACCCGCACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGA 1640 Query 46866 CCGTTGGCACGGTGATACCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 46925 | || ||| |||| || || ||| | | ||| | ||||| ||||| |||||||| |||| Sbjct 1641 CGGTCGGCTCGGTCATCCCGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACA 1700 Query 46926 TCGGGTGCGGCATGATCGGCG-TCGAAACCTGGGTGCA-GAAGAGCGACATCG-CAGACC 46982 |||| ||||| ||||||| || ||| | | || || || ||||||| ||| | | | Sbjct 1701 TCGGCTGCGGGATGATCGCCGTTCGTA--CGCCGTTCACGAGGAGCGACGTCGACGGTCG 1758 Query 46983 TCAGCCTCGCGGACCTGCGTGAGCGCGTCGAGATCGCCATCCCGCTCTCGCCGGGGAACT 47042 || | ||||| ||||| || |||| ||||| ||||||||| || ||| | || | Sbjct 1759 TC-GGCTCGCCGACCTCCGGGAGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGT 1817 Query 47043 ACAACGTCGATGGGCGTTGGGCCGCGCACACCGAGGA---GCGCATTGCGCGGCTCGAGG 47099 ||||| | | || ||| ||| ||||| ||| |||||| | ||| ||| Sbjct 1818 ACAACCGC-AAGGTCGT--GGC------CACCGCGGAACCGCGCATCACCGAGCTGGAGC 1868 Query 47100 CCATGGCCGAAGAGAAGGGCGTCGACCTCAAGCA-TTCGCC--GAAGTGGCGGGAACAGC 47156 | ||||| |||| ||| |||||| ||| | |||| ||| ||||| ||| Sbjct 1869 AGCTCGCCGAGAAGAACGGCTTCGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGT 1928 Query 47157 TGGGTTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCACGAGCGTG 47216 |||| ||||||| |||||||||||||||||| | ||| || | |||| | Sbjct 1929 TGGGCACGCTCGGTTCAGGCAACCACTTCATCGAG------GTGTCGGTCGATGAGC-TC 1981 Query 47217 GACCGGGCGCGATCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTGGGAAACAAGATCG 47276 || |||| ||||||| |||||||| || ||| || || || || |||||||||| Sbjct 1982 GATCGGG-----TCTGGCTGTTCCTGCACTCGGGCTCGCGAGGCGTCGGCAACAAGATCG 2036 Query 47277 CGCAGAAGCACANNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATCCAGCTCGCCA 47336 | | | |||| ||||| ||| | || || Sbjct 2037 CCGGGCACCACATCGCCGTCGCCCAGCGGCTGGCGAGGCAGTGGTGGATCGACCTTCCCG 2096 Query 47337 ACCCCGACCTGGCCTACCTGCCGTCCGGGACTGAC--GAGTTCGGCGACTACATCCGCGA 47394 ||||||||||||| |||||| ||| || | || |||||| | ||||||||| || Sbjct 2097 ACCCCGACCTGGCATACCTG--GTCGAGGGCACACCGGAGTTCACCCGCTACATCCGGGA 2154 Query 47395 GCTCCGGTGGGCACAGGCTTTCGCGCTCGAGAACCGCGCCGAGATGATGGACCGTTTCGT 47454 ||| |||||||| ||| |||||||| |||||| | ||||||||||| || || | Sbjct 2155 GCTGCGGTGGGCCCAGCACTTCGCGCTGCTGAACCGGGAGGAGATGATGGATCGCGTCAT 2214 Query 47455 C---CATGTGTTCACCCGGTGGCTCGAGTACTCCGATGCTGTCGAATTCGGCGAGCTCGG 47511 | || |||| | || |||| | || ||| ||||| ||| | | Sbjct 2215 CCGGCAGGTGT---CGGAGTTCCTCG-GAACCCCG-----GTCGA------CGAACAGGA 2259 Query 47512 GCGCGACGTCGAAGTCCGGCGAATCAATTGCCACCACAACTACACCGAGCGGGTCGAGAT 47571 |||| ||||| ||||||||||||| ||||||| || || Sbjct 2260 GCGC------------------ATCAACTGCCACCACAACTTCACCGAGTCGGAGAAGCA 2301 Query 47572 CGCCGGCAAGAAAGTGTGGCTCACACGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATA 47631 | ||| ||| | |||||| | |||| ||||| || ||| | || || |||||| Sbjct 2302 CTACGGGAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTCGACC 2361 Query 47632 TGGACTGATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGA 47691 || || |||||||| || ||||| ||| || || || || | || || | Sbjct 2362 GGGCCTCATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGT-----GGAAGGGCTCGGC 2416 Query 47692 GTCCGGC-----CTCTTCTCTGCGCCCCATGGTGCCGGCCGTCAGTATTCGCGCACCCAG 47746 | || || || ||| | || || |||||||| || |||| || ||| | | Sbjct 2417 GACCCGCAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCTCGGCG 2476 Query 47747 GCCAGGAAGTTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAATACCGC 47806 || || | ||||| | || | || || |||| ||||||||| | ||| Sbjct 2477 GCGCGGCGGACCTTCACGCACGACCAGCTGCGAGAGGCGATGACGGGCATCGAGTTCCGT 2536 Query 47807 CACGGTGAGGAGTGGATTGACGAGATCCCCGACGCCTACAAGGATATCGACCAGGTGATG 47866 || || | | || ||||||||||| | || |||||| ||||||||||||||| Sbjct 2537 GACACCGATGCCTTCATCGACGAGATCCCGCAGGCGTACAAGCCGATCGACCAGGTGATG 2596 Query 47867 GAAGACGCC 47875 | || ||| Sbjct 2597 GCGGATGCC 2605 >seq1940 Length=14353 Score = 212 bits (234), Expect = 4e-50 Identities = 255/339 (75%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 70877 CGACACCGTGATCACCGTGATCGGAAATCTGACCGCCGATCCCGAACTGCGCTTCACCCC 70936 ||| ||||| ||||||||| | ||||| || || ||||| ||||| ||||||| ||| | Sbjct 12929 CGAAACCGTCATCACCGTGGTGGGAAACCTCACGGCCGACCCCGAGCTGCGCTACACGCA 12870 Query 70937 CT-CGGGCGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTTCGACAA-G 70994 ||||| |||||| || ||||||||| ||||| || || ||| |||||||| | Sbjct 12869 GAACGGGCT-GCCGGTGGCGAACTTCACCATCGCATCGACGCCTCGGAACTTCGACCGTG 12811 Query 70995 CAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACA-TCTGGCGCGA 71053 | | | || ||||||||||||| ||| ||||| ||||| || |||| | |||||||||| Sbjct 12810 CCG-CGAATGAGTGGAAGGACGGCGATGCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGA 12753 Query 71054 GCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCG 71113 | |||||| |||| | | ||| || | ||||||||||||||||||| ||||| || Sbjct 12752 GTTCGCCGAGCACGTGGCGGGTTCGTTGACGAAGGGCATGCGCGTCATCGCGCAGGGCCG 12693 Query 71114 CCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGA 71173 || |||||| |||| || || ||| | | || || | |||||||| || Sbjct 12692 TCTGCGTCAGCGCTCCTACCAGGACCGCGAGGGCAACCAGCGCACCGCGATCGAGCTGGA 12633 Query 71174 GGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 71212 |||||| |||||||||||| |||| |||||||| ||||| Sbjct 12632 GGTCGACGAGATCGGCCCCTCGCTCCGGTACGCGACCGC 12594 >seq1272 Length=12228 Score = 113 bits (124), Expect = 3e-20 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 42749 TCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGA-AGGAA 42807 ||||||| ||||| | || ||||| |||||| | |||||||||||||| ||| | | Sbjct 9649 TCGACGCCGACCCCGAGGTCGACGTGATCATCATCGCCCGCGGCGGCGG--CGACCCGCA 9706 Query 42808 GAC-CTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGC-GTCTGCAACCC 42865 ||| || ||| | ||||||| ||||| || || | ||| |||| | |||| Sbjct 9707 GACGCTGCTCGGCTTCAGCGACGAGAAGCTGGTGCGAGCGGTCGCCGCGGTCT-CCACCC 9765 Query 42866 CGGTTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACC 42925 |||| ||| |||||| || |||||||| || | ||||| |||||| ||| | || | Sbjct 9766 CGGTGGTGAGTGCGATCGGGCACGAGAACGACCACCCGCTGCTCGACGACGTGGCCGATC 9825 Query 42926 TTCGAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACGT 42974 | || || | || ||||| || || |||||||| ||||| |||||||| Sbjct 9826 TGCGCGCCTCGACCCCGACCGACGCCGCGAAACGCGTCGTGCCCGACGT 9874 >seq90 Length=95466 Score = 95.1 bits (104), Expect = 7e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 46803 CGCTGCCGTTCATCCACCCTCACGTCGCTCTGATGCCGGATGCACACGGCGGCAAAGGAT 46862 || |||||||| || ||| || || |||||||||| | |||| |||||||| Sbjct 70161 CGGTGCCGTTCGTCGGCCCGTGGGTGGCGGTGATGCCGGACGTGCACGTAGGCAAAGGGG 70102 Query 46863 CTGCCGTTGGCACGGTGATACCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGG 46922 | |||| ||| ||||||| || || | ||| | || ||||||||||||||||||| Sbjct 70101 CCACCGTGGGCTCGGTGATCCCTACCCGCGGCGCGATCATTCCGGCCGCGGTCGGCGTGG 70042 Query 46923 ACATCGGGTGCGGCATG 46939 ||||||| ||||||||| Sbjct 70041 ACATCGGCTGCGGCATG 70025 >seq46 Length=239904 Score = 87.8 bits (96), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 46805 CTGCCGTTCATCCACCCTCACGTCGCTCTGATGCCGGATGCACACGGCGGCAAAGGATCT 46864 ||||| ||||| || ||| |||| |||||||| | ||| ||||| || | Sbjct 145162 CTGCCCATCATCTACAAGCACATCGCGGCCATGCCGGACGTGCACTACGGCATCGGTGCC 145103 Query 46865 GCCGTTGGCACGGTGATACCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 46924 | || || ||||||| || || | | ||||||||||||||||| || ||||||||| Sbjct 145102 ACGGTGGGTTCGGTGATTCCGACCATCAAGGCCGTGATCCCGGCCGCCGTGGGCGTGGAC 145043 Query 46925 ATCGGGTGCGGCATGATCGGCGT 46947 ||||| ||||||||||| ||||| Sbjct 145042 ATCGGCTGCGGCATGAT-GGCGT 145021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296215513530013