Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030908.1 Length=36938 Score E Sequences producing significant alignments: (Bits) Value seq757 248 2e-61 seq447 84.2 5e-12 >seq757 Length=83746 Score = 248 bits (274), Expect = 2e-61 Identities = 272/362 (75%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 1401 AAAGACGACCGCACCCTGGACATCTTCGATGTTCCGCAGCCGGCCCGCGCTATACCTGGT 1460 || || || || || | ||||||||| ||| || ||||| | | ||||| || || Sbjct 49947 AAGGATGATCGTACGTTAGACATCTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGG 50006 Query 1461 GAGTGCAACTACGCCGCCCAAATCAGCGAACTGGTCAGCGAAATTCTGAAGGCTTGCGAC 1520 | ||||| | ||||| || |||| |||||| ||||||| |||||||| | || ||| Sbjct 50007 AATGGCAACAATGCCGCACAGGTCAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGAT 50066 Query 1521 CTTGACCGTTACGAGGTCGCCGCCCGCATGTCGCGCCTGTCCGGCGATGACGTGAGTAAG 1580 || ||||||||||| | | || |||||||| ||| |||| |||||||||||||||||| Sbjct 50067 CTGGACCGTTACGAAATTGGTGCACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAG 50126 Query 1581 AACATGCTCGACGCCTGGTCGAGCCCCGCCCGAACCGATCACAACCTGCCTTTCTACCGC 1640 ||||||| ||||| ||||||||||| |||||||| || || |||||||| ||||| | Sbjct 50127 CACATGCTTGACGCGTGGTCGAGCCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGA 50186 Query 1641 GCCGCCCTCCTGGAGGACGTCTGCGCGAGCCATCTGCTGACCAACTGGCTGGTCGGTGTG 1700 ||| | || || || || || || || || | | ||| |||||||||| | Sbjct 50187 GCCCCACTGCTTGAAGAAGTTTGTAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAA 50246 Query 1701 CGTGGCGGCCGCGTGGCTTACGGCCGCGATGCACTTCTCGCCGAGTTGGGCCGTCTTGAG 1760 ||||| ||||||||||||||||| ||||||||||| ||| ||| | || ||||| | | Sbjct 50247 CGTGGTGGCCGCGTGGCTTACGGTCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCG 50306 Query 1761 CG 1762 || Sbjct 50307 CG 50308 Score = 123 bits (136), Expect = 6e-24 Identities = 277/416 (67%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 177 ATCCAGCGGCTAGCCCATACAACCCTTCCGATGATTTCCAGGTCCGACAGCTTTGCCTTT 236 ||||| | || ||||||||| || | || || || |||||||| || ||| || | Sbjct 48700 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 48759 Query 237 GGGACGATCATTTCGGTATAGGCCTTGTTTTCACTGATGATCGACACCGACCCGTCGAAG 296 ||||| | ||| ||| ||||||||||| ||||||||||| | ||||||||||| Sbjct 48760 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 48819 Query 297 CGTCTTTGCAGGCGCTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGACTGCCGCG 356 | | || || | || |||||||||||||||||||| || | |||||| || ||| | Sbjct 48820 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTCT 48879 Query 357 TCTTGGACCGTTGACTTGGTGTGATCCACAAGCACTGTATCTCCATCGCACAGCAGAGGC 416 | | | || | |||| || | | ||| ||||| ||||||| || || | Sbjct 48880 CCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCCC 48939 Query 417 TCCATAGAGTCACCGCCAATGCGGATCGCTGAGATACTGGAGGGGTCCAAACCCTTTTTT 476 ||||| || || ||| | | ||||| || || | | | | ||||| || | || Sbjct 48940 TCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTTG 48999 Query 477 CGCAGGCTGTACCGAGTGAATGCAAGATTCACAAGCACGGTGGCGCCGTCGGTCCAGGAA 536 || || |||| ||||| ||||| | || || || || || ||| |||||| Sbjct 49000 CGAAGCGAGTACGCGGTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAGGCG 49059 Query 537 CCATGCCCTGCGCTCACCTGGCCGTCATAGAGGGGTATGTATACATACTCGCCCTC 592 || || || || || ||| |||| || | || | ||| | |||| | |||| Sbjct 49060 CCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCCTC 49115 Score = 118 bits (130), Expect = 3e-22 Identities = 219/321 (68%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 9769 AAAATCCACATCGCCAAGACCCAGCTCGGCATGGACGATGACACCTATCGCGCATTGCTC 9828 || |||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 57316 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 57375 Query 9829 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGGTCGATCAGGTG 9888 | ||||| ||||| ||||| |||||||| ||| | ||| |||||| ||| || Sbjct 57376 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 57435 Query 9889 CTGGTCGAACTCCAGCGCTTGGGCTGG------AAACCGAAGAGCAATCGGCAAGGCCGG 9942 |||| ||| | |||||||||||| ||||||| | || ||||||||| Sbjct 57436 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 57492 Query 9943 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 10002 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 57493 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 57552 Query 10003 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTC 10062 ||| ||| | ||| ||||| || |||||| ||||||| |||||||||| ||||| Sbjct 57553 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 57612 Query 10063 GAGCGGGTCGAGTGGCTGGAC 10083 ||||| || || ||||| ||| Sbjct 57613 GAGCGAGTGGAATGGCTAGAC 57633 Score = 102 bits (112), Expect = 2e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 6154 GCCTGGGGCGAGCGTCCGCCTGTCTTCGTCCAGCTGCTGGCCGCCGAGGTGGCCCGCAGC 6213 || |||||| || |||| | ||||| | ||||| |||||||| || || || | Sbjct 53781 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 53840 Query 6214 AGCCAGACGAAGGCCGGCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 6273 | | |||| |||||| || || |||||||||||||| || |||||||| | ||| Sbjct 53841 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 53900 Query 6274 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGTCGTGTCCTGGCCGCGCTG 6333 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 53901 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 53960 Query 6334 AGCCGCATTGAGTGCCCGGCCCTGGGCGAGGCGGTGACCTCGGTCGAGTGC 6384 | |||||||| || ||||||| |||| | || ||| ||| | ||||| Sbjct 53961 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTGC 54011 Score = 95.1 bits (104), Expect = 3e-15 Identities = 71/81 (88%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 9432 CATTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTGGTCCGGTAC 9491 |||| ||||||| ||||||||| | | ||| |||||||||||||||||| ||||||||| Sbjct 56939 CATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 56997 Query 9492 TGACGAGCAGCCAACCCATGA 9512 ||| |||||||| |||||||| Sbjct 56998 TGATGAGCAGCC-ACCCATGA 57017 >seq447 Length=48793 Score = 84.2 bits (92), Expect = 5e-12 Identities = 166/241 (69%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 11460 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACG--CAACAA 11517 |||| ||||| | |||||| ||| ||||||||||||| | || | || |||| | Sbjct 37186 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 37242 Query 11518 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATAC 11577 ||||| ||||| || | ||||| | ||| || || ||||| || ||||| Sbjct 37243 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 37302 Query 11578 CGCACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11634 | | ||||| ||||| ||| ||| ||||||||||||| |||| |||||| || Sbjct 37303 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 37359 Query 11635 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 11694 ||| | ||||| | || | ||| ||||||||||||||| |||||||| || Sbjct 37360 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 37419 Query 11695 C 11695 | Sbjct 37420 C 37420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118065519480600