Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq284 187 8e-43 seq401 178 4e-40 seq77 165 3e-36 seq2511 132 2e-26 seq82 131 5e-26 seq1914 113 1e-20 seq355 100 9e-17 seq590 96.9 1e-15 seq1719 91.5 5e-14 seq257 89.7 2e-13 seq59 89.7 2e-13 seq105 87.8 6e-13 >seq284 Length=207326 Score = 187 bits (206), Expect = 8e-43 Identities = 281/393 (72%), Gaps = 16/393 (4%) Strand=Plus/Plus Query 33921 GCCCGGAGCGAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGC- 33979 |||||| || || | |||||| || | ||| ||||| | ||| || || |||| Sbjct 36095 GCCCGGCGCCAGGTTCTCGAAGCGGGTGTATTTACCGATGAAGGCCAGGCGCGTGGTGCC 36154 Query 33980 --TTGGCTCGCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGT 34037 ||||| ||||| || || || |||| || | ||||| | ||| | || ||| Sbjct 36155 GATTGGC---CCGTTACGCTGTTTACCGATAATGATTTCAGCGATGCCTTTATGCTCGGT 36211 Query 34038 GTCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGAT 34097 ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 36212 CTCCGGGTGATACACCTCGTCCCGGTATACGAACATGATCACGTCAGCATCCTGCTCGAT 36271 Query 34098 CGCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGA 34157 ||| ||||| || |||| ||| || | ||||| || |||||||| |||||||| || || Sbjct 36272 CGCTCCGGATTCCCGCAAGTCGGAGTTGATCGGGCGTTTGTTCGGACGCTGCTCAAGAGA 36331 Query 34158 GCGGTTGAGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGC- 34216 ||||||||||||||||| | | ||| ||| | ||| ||||||| |||| | Sbjct 36332 TCGGTTGAGCTGCGACAGGGCAACCACCGGGCAGTTGAATTCCTTGGCCAG-GGCTTTCA 36390 Query 34217 ACTGGCGGGACATGTCGCTGACGTCCTCGGTGCGAGTTGAC-TTGCCGGAGC------TC 34269 || |||||| || ||| | || | ||| || | || | || ||||| || Sbjct 36391 ACGAGCGGGAAATCTCGGAAATCTCGTTGGTCCG-GCTGTCACCGCTGGAGCCCGGGATC 36449 Query 34270 TCCAGCAACTGCAGGTAGTCCACCACCAGCAGG 34302 | || ||||||||||||||| | || | |||| Sbjct 36450 TGCATCAACTGCAGGTAGTCGATCATGATCAGG 36482 >seq401 Length=77198 Score = 178 bits (196), Expect = 4e-40 Identities = 197/260 (76%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 33930 GAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGCTTGGCTCGCC 33989 |||| || | || || | | ||| || | |||||| ||| || || | | || || Sbjct 63121 GAGCGGCACAAAACGAGTTTCCTTGCCAATAAACGCGGTCCGCACGGTACCGGTTTCACC 63062 Query 33990 GTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGATA 34049 ||| |||||||| ||| ||||||||| || || || ||||| |||||||||| || Sbjct 63061 GTTCCGGTGCTTGCCGAGGATCAACTCGGCAACCCCCTTGTACTCAGTGTCCGGGTTGTA 63002 Query 34050 GACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTC 34109 |||||||||||| || ||||||||||| | ||| ||||||||||||||||| |||||||| Sbjct 63001 GACCTCGTCTCGATAGACGAACATGATGATGTCCGCGTCCTGCTCGATCGCGCCGGACTC 62942 Query 34110 GCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTC-CAGGGAGCGGTTGAGCT 34168 |||| ||| | ||| || |||||||| ||||||||||| || | |||| | || Sbjct 62941 CCGCAAGTCTGCGTTCACAGGGCGCTTGTTGGGCCGCTGCTCACACTG-GCGGGACAACT 62883 Query 34169 GCGACAGCACGATCACGGGG 34188 |||| ||| |||| |||||| Sbjct 62882 GCGATAGCGCGATGACGGGG 62863 >seq77 Length=324652 Score = 165 bits (182), Expect = 3e-36 Identities = 172/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTG 34046 |||||| || ||||| ||||||| | ||| ||| ||| || | | | || |||| Sbjct 103073 GCCGTTACGCTGCTTGCCGATGATGATCTCGGCCGTGCCCTTGTCCGGCGAATCGGGGTT 103132 Query 34047 ATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGA 34106 ||||||||||| ||||| | ||||| |||||||||||||||||| ||||| || ||||| Sbjct 103133 GTAGACCTCGTCGCGGTAGATGAACAGGATCACGTCGGCGTCCTGTTCGATAGCGCCGGA 103192 Query 34107 CTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAG 34166 ||||||||||| ||||| || |||||||| || ||||| |||||| ||||| | Sbjct 103193 TTCGCGCAGGTCGCTCATCACGGGACGCTTGTTGGGACGCTGTTCCAGGCTTCGGTTCAA 103252 Query 34167 CTGCGACAGCACGATCA-CGGGGATACCAAGCTCCATGGCCAG 34208 |||||||||| |||||| |||| | | ||||| ||||||| Sbjct 103253 CTGCGACAGCGCGATCAGCGGGCAGTTC-AGCTCTTTGGCCAG 103294 >seq2511 Length=13392 Score = 132 bits (146), Expect = 2e-26 Identities = 214/307 (70%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 30777 CTCGGCCTCATCGACCCATGCGATGAGGATGCGCGCCTTCGACTTGATGCTATCGAGGTT 30836 |||||||||||||||||| ||||||||||| | || ||||||||||| ||| ||| Sbjct 1645 CTCGGCCTCATCGACCCACAGTATGAGGATGCGACCTTTTGACTTGATGCTTGCGACGTT 1586 Query 30837 GTGGCGTAGGCCGGAGAACGAGAACCACACCCGTCGGTTGCGGGTGCGGATGAACTTCTC 30896 | | | ||| ||||| |||||| | ||| | || |||| | |||| |||| || Sbjct 1585 GCGATCCAAGCCAACGAACGTGAACCAGATCCGACCGTCGCGGCTCTTGATGTACTTATC 1526 Query 30897 GCCGATCTCGAAGTAGGCGTTGAGCCAGGGTTCGGACCGGATCGCCTGCTTGACCTCCTC 30956 ||| |||||| |||| | ||| | || || || || ||||| |||||| Sbjct 1525 GCCTATCTCGTAGTAATCAGCGAGAAAAGGCTCATCTTCAATTGCTCGCTTGCACTCCTC 1466 Query 30957 CATAGAGGAGTCTTCCAGGCTGTTCATGTACTCCCGGCCGCAGAGAATCTGCCCGGAGAT 31016 | |||||||| || || ||||||| ||| ||||||||| | | ||| || | | Sbjct 1465 AAGCGAGGAGTCCTCGAGCGAGTTCATGAACTGCCGGCCGCAAACGAGCTGACCAGTAAC 1406 Query 31017 ACCAGCCTCGGCGAACATGTAGGCCCGGATCGCCGCCATCTTGGCAAAGCTGCGGGTCTT 31076 || |||| || | |||||| |||| | || ||||||||||||| ||| ||||| Sbjct 1405 TCCGGCCTGTCCGTAGATGTAGCCCCGCACTGCAATCATCTTGGCAAAGGAGCGCGTCTT 1346 Query 31077 GCCGCTG 31083 ||||| Sbjct 1345 --CGCTG 1341 >seq82 Length=126987 Score = 131 bits (144), Expect = 5e-26 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 ||||| ||||| | ||||| ||||| ||| |||||||||||||| || ||||| ||||| Sbjct 80483 TCGTCGCGGTAGATGAACACGATCATGTCCGCGTCCTGCTCGATAGCGCCGGATTCGCGA 80424 Query 34114 AGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGAC 34173 ||||| | ||||| ||| ||||||| | ||| ||||| |||||||||||||| ||| Sbjct 80423 AGGTCGGCCATCACCGGGCGCTTGTCGGTACGCGTTTCCAGCGAGCGGTTGAGCTGGGAC 80364 Query 34174 AGCACGATCACGGGGATACCAAGCTCCATGGCCAG 34208 ||| ||||||| || | || ||| ||||||| Sbjct 80363 AGCGCGATCACCGGCACGTTGAGTTCCTTGGCCAG 80329 >seq1914 Length=11218 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 34042 GGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCC 34101 ||||| || |||||||| ||||| |||||||| |||| ||| |||||||| || ||||| Sbjct 4868 GGGTGGTACACCTCGTCCCGGTAGACGAACATAATCAGGTCCGCGTCCTGTTCAATCGCA 4809 Query 34102 CCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGG 34161 ||| || |||||||| | | ||||| ||||| || ||||| ||||||| ||| Sbjct 4808 CCGCTATCACGCAGGTCTGCGTTGATCGGACGCTTATTTGGCCGTCGCTCCAGTTCTCGG 4749 Query 34162 TTGAGCTGCGACAGCACGATCACGGGG 34188 |||||||| || ||| | | ||| ||| Sbjct 4748 TTGAGCTGGGAAAGCGCAACCACCGGG 4722 >seq355 Length=98473 Score = 100 bits (110), Expect = 9e-17 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 47934 AGTTCGTCCGCGAAACCCGGCGAGCGTCGATTTCGGCGATCCAGCGCAAGCTGAAGATCG 47993 ||||||| | |||| ||| || || ||||| || || | ||||||||||||||||| | Sbjct 86665 AGTTCGTGCTTGAAAGCCGCCGCGCCTCGATCTCCGCCGTACAGCGCAAGCTGAAGATTG 86724 Query 47994 GCTACAACCGCGCAGCCCGCATCATCGAGCGGATGGAGAAAGAAGGCGTAGTCACAGCGG 48053 ||||||||||||| |||||||| ||||| ||||| | | ||||| ||||| || Sbjct 86725 GCTACAACCGCGCTGCCCGCATGATCGAAGCCATGGAAATGGCCGGCGTGGTCACCTCGA 86784 Query 48054 CCGACAGCAACGGCGGCCGCGAGGT 48078 ||| ||||||| ||||| || Sbjct 86785 TGAACACCAACGGCTCGCGCGAAGT 86809 >seq590 Length=15478 Score = 96.9 bits (106), Expect = 1e-15 Identities = 282/427 (66%), Gaps = 28/427 (7%) Strand=Plus/Minus Query 33920 CGCCCGGAGCGAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGACAGTGC 33979 |||| ||||| | | | ||| |||||||| | ||| |||||||| || ||| Sbjct 3241 CGCCGGGAGCCATGTCCATGAAGCGCGAGTAGTGCCCCTGGAACGCG------ACGGTGA 3188 Query 33980 TTGGCTCG------CCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACT 34033 | | | || ||||| |||||||| |||| ||| | || ||| |||| ||| || Sbjct 3187 TCGTCGCGGTAGGTCCGTTACGGTGCTTGGCGACGATGAGGTCGGCCTCGCC-CGG-AC- 3131 Query 34034 GGGTGTCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCT 34093 | |||| || || ||| ||| |||| || | |||| || |||||||||||||| Sbjct 3130 GCACGTCCTTGTCGTACACCGAGTCGCGGTGCAGCAGGATGACCATGTCGGCGTCCTGCT 3071 Query 34094 CGATCGCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCA 34153 |||||| || ||||| |||||||| ||| || ||||| | |||||||| Sbjct 3070 CGATCGAGCCCGACTCTCGCAGGTCGCTGATCGCGGGCTTCTTGTCGGTGCGCTGCTC-- 3013 Query 34154 GGGA--GCGGTTGAGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAG 34211 |||| ||||| || ||||| || |||| || || | |||||| |||| | || Sbjct 3012 GGGACCACGGTTCAGTTGCGAGAGGGCGATGACCGGAACCTGCAGCTCCTTGGCGATGAG 2953 Query 34212 CTTGCACTGGCGGGACATGTCGCTGACGTCCT--CGGTGCGAGTTGA----CTTGCCGGA 34265 |||| ||||| | || ||| |||| | |||| | || |||||| || Sbjct 2952 CTTGAGGCTTCGGGAGAACTCCGAGACCTCCTGCTGACGCGACTCGACGCGCTTGCCCGA 2893 Query 34266 GCTCTCCAGCAACTGCAGGTAGTCCACCACCAGCAGGCTCAACCCATGGCGCTGCTTGTG 34325 | | || || |||||| ||||| | | | || || || || | |||||||||| | Sbjct 2892 GGT---CATCAGCTGCAGATAGTCGATGATGACCATGCGCAGTCCTTCGCGCTGCTTGAG 2836 Query 34326 ACGCCGG 34332 || ||| Sbjct 2835 TCGACGG 2829 >seq1719 Length=12511 Score = 91.5 bits (100), Expect = 5e-14 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 ||||| || || ||||| || | ||||||||||||||||||||||| |||||| || ||| Sbjct 5790 TCGTCGCGATAAACGAAGATCACCACGTCGGCGTCCTGCTCGATCGACCCGGATTCACGC 5731 Query 34114 AGGTCCGACATCATCGGTCGCTTGT-TCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172 ||||| || | | ||| ||||||| | || ||| |||| ||| |||||| || Sbjct 5730 AGGTCGGAGAGCTGCGGGCGCTTGTCTTCGCGGCT-TTCCACCTGACGGGAGAGCTGTGA 5672 Query 34173 CAGCACGAT 34181 |||| |||| Sbjct 5671 CAGCGCGAT 5663 >seq257 Length=84698 Score = 89.7 bits (98), Expect = 2e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 40019 TCCTGTTCCTCCCACTTCAGCGTCACGGTGCCGTCGTCATTGAAGACCATGTCGATGCCG 40078 ||||| | |||||| ||| ||||||| ||||||||||||||| || || | || Sbjct 83989 TCCTGCTGCTCCCATCTCACCGTCACGCTGCCGTCGTCATTGAGTGTCAGCTCAAGCTCG 83930 Query 40079 TCCGTCTCGGATAGCAGTTCCATCACCTGATCCCACGCTTCATCCGGATCCGTGTCCAGG 40138 || || || | | || || ||||| |||||| | |||| ||||||||| || Sbjct 83929 TCGGTATCAGCGATCACGCTCAGCACCTCCTCCCACTCCCGATCCCCATCCGTGTCAAGA 83870 Query 40139 CGATGGATCGTCACCGTGCGCAGGTCCTGCGCTTTC-GGTGAGTTGATCATCTCCGATAT 40197 ||||| ||||||||| |||| | ||||||| | ||||| ||||||||| || | Sbjct 83869 CGATGAATCGTCACCCAGCGCTGCGCCTGCGCGACCGGGTGA-TTGATCATCGATGAGAC 83811 Query 40198 GCGGAGCCCCA 40208 ||| || |||| Sbjct 83810 GCGCAGACCCA 83800 >seq59 Length=142688 Score = 89.7 bits (98), Expect = 2e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 47937 TCGTCCGCGAAACCCGGCGAGCGTCGATTTC-GGCGATCCAGCGCAAGCTGAAGATCGGC 47995 ||||| ||||||||| || || ||||| || |||| | |||||| || ||||||||| Sbjct 116277 TCGTCACCGAAACCCGACGTGCCTCGATCTCCGGCG-TGCAGCGCCGACTCAAGATCGGC 116335 Query 47996 TACAACCGCGCAGCCCGCATCATCGAGCGGATGGAGAAAGAAGGCGTAGTCACAGCGGCC 48055 |||||||| || || ||| | |||||| |||||| | | ||||| |||| || || Sbjct 116336 TACAACCGTGCCGCGCGCCTGATCGAGGCGATGGAAATGGCCGGCGTGGTCAGCCCGCCC 116395 Query 48056 GACAGCAACGGCGGCCGC 48073 || |||||||| |||| Sbjct 116396 GAACACAACGGCGACCGC 116413 >seq105 Length=265611 Score = 87.8 bits (96), Expect = 6e-13 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 42757 ATGCTGATCCTGACCAGAAGACCCGGCGAAACCCTGCATATCGGCGACAACATCACCGTC 42816 ||| |||||||||| | | |||||||||||| ||||| ||| ||| ||| Sbjct 129946 ATGTTGATCCTGACTCGCCGCGTAGGCGAAACCCTGATGATCGGTGACTCGGTCAGCGTG 130005 Query 42817 ACGGTCCTTGGCAGCCAGGGCGACCAGGTGCGCCTCGGCATCACCGCCCCGGACGACGTC 42876 || || || ||| | ||||| |||||||||| |||| ||||| || ||| | ||||| Sbjct 130006 ACCGTGCTCGGCGTCAAGGGCAACCAGGTGCGTATCGGTATCACTGCTCCGAAGGACGTG 130065 Query 42877 GCCATCCACCGCTCCGAGATCTACCAGC 42904 ||| | |||||| ||||| ||||||| Sbjct 130066 GCCGTGCACCGCGAAGAGATTTACCAGC 130093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160444321798230