Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030911.1 Length=45858 Score E Sequences producing significant alignments: (Bits) Value seq1940 223 1e-53 seq9023 105 2e-18 >seq1940 Length=14353 Score = 223 bits (246), Expect = 1e-53 Identities = 264/355 (74%), Gaps = 2/355 (1%) Strand=Plus/Minus Query 36170 CATGGCAGGCGAAACCATCATCACGGTAATCGGCAACCTGACAGCCGATCCGGAACTGCG 36229 |||||| ||||||||| ||||||| || | || ||||| || ||||| || || ||||| Sbjct 12938 CATGGCCGGCGAAACCGTCATCACCGTGGTGGGAAACCTCACGGCCGACCCCGAGCTGCG 12879 Query 36230 GTTCACTCCGTCCGGCGCGGCGGTCGCGAACTTCACGGTCGCTTCGACTCCGCGACAGTT 36289 | ||| | | ||| | |||| ||||||||||| |||| ||||| || || | || Sbjct 12878 CTACACGCAGAACGGGCTGCCGGTGGCGAACTTCACCATCGCATCGACGCCTCGGAACTT 12819 Query 36290 CGACCGGGACGCGAACGAGTGGAAGGACGGCGATCCGCTGTTCATGCGCTGCAACC-TGT 36348 |||||| | |||||| |||||||||||||||||| |||||||| | || |||| || | | Sbjct 12818 CGACCGTGCCGCGAATGAGTGGAAGGACGGCGATGCGCTGTTCCTCCG-TGCATCCGTCT 12760 Query 36349 GGCGTGACGCGGCGGAGAACGTCACGGACTCGCTGTCGAAGGGGACTCGGGTCATCGTGC 36408 |||| || || ||| |||| ||| ||| || ||||||| | || ||||||| || Sbjct 12759 GGCGCGAGTTCGCCGAGCACGTGGCGGGTTCGTTGACGAAGGGCATGCGCGTCATCGCGC 12700 Query 36409 AGGGCCGGCTGAAACAGCGGAGCTACGAGGACAAAGAGGGCGTCACGCGGACCATCGTCG 36468 ||||||| ||| ||||| |||| ||||| |||||| | ||| ||| ||| Sbjct 12699 AGGGCCGTCTGCGTCAGCGCTCCTACCAGGACCGCGAGGGCAACCAGCGCACCGCGATCG 12640 Query 36469 AGCTGGAAGTGGACGAGATCGGTCCGTCCCTGAAGTACGCGACGGCGAACGTGAC 36523 ||||||| || ||||||||||| || || || ||||||||| ||| | || || Sbjct 12639 AGCTGGAGGTCGACGAGATCGGCCCCTCGCTCCGGTACGCGACCGCGCAGGTCAC 12585 >seq9023 Length=490 Score = 105 bits (116), Expect = 2e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 24127 TTTGTGCCCCCTGTAGGACTCGAACCTACGACCTAGTGATTAAAAGTCACCAGCTCTACC 24186 ||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 371 TTTGTGCCCCCAGTAGGACTCGAACCTACGACCTGCGGATTAAAAGTCCGTAGCTCTACC 430 Query 24187 AACTGAGCTAAAGGGGCG 24204 |||||||||| ||||||| Sbjct 431 AACTGAGCTATAGGGGCG 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146606019040680