Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030919.1 Length=42418 Score E Sequences producing significant alignments: (Bits) Value seq4950 953 0.0 seq846 100 8e-17 seq2747 86.0 2e-12 >seq4950 Length=777 Score = 953 bits (1056), Expect = 0.0 Identities = 620/681 (91%), Gaps = 0/681 (0%) Strand=Plus/Minus Query 21128 CATCTGTGTTAATCACTGGCCCCGGTGGTAACGATGGTCTGGAAGGTGTCAGATACAAAC 21187 |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| || Sbjct 777 CATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATAC 718 Query 21188 CATACAAGGACGTAGTTGGTGTGTTGACTGTGTGTTATGGCCACGTCGGAAAAGACATCA 21247 ||||||| || | |||||||| | |||||| ||| | || || ||||||||||||| Sbjct 717 CATACAAAGATATTGTTGGTGTATGGACTGTATGTCACGGGCATACAGGAAAAGACATCA 658 Query 21248 TGCTCGGTAAAACGTATACCGAAGCAGAATGCGAAGCCCTCCTGAATAAAGACCTTGCCA 21307 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 657 TGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCCTCCTGAATAAAGACCTTGCCA 598 Query 21308 CGGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATATACCGGAAACAACGCGCGGCG 21367 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 597 CGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATATACCGGAAACAACGCGCGGCG 538 Query 21368 CTCTTTATTCGTTCGTCTATAACGTGGGCGCAGGCAATTTCAGAACATCGACGCTTCTTC 21427 ||||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 537 CTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATTTCAGAACATCGACGCTTCTTC 478 Query 21428 GCAAAATCAACCAGGGCGATATCAAGGGCGCATGTGACCAGCTACGTCGCTGGACATACG 21487 ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| | Sbjct 477 GCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATCAGCTACGTCGCTGGACATATG 418 Query 21488 CTGGCGGTAAGCAATGGAAAGGGCTGATGACTCGCCGTGAGATTGAGCGTGAAGTCTGTT 21547 |||||||||||||||||||||| || |||||||| |||||||||||||||||| |||||| Sbjct 417 CTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTGAGATTGAGCGTGAAATCTGTT 358 Query 21548 TGTGGGGGCAGCAATGAGCAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCAT 21607 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 357 TGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCAT 298 Query 21608 CGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCA 21667 ||||||||||||||||||||||||||||||||||||||| || || ||||||||| || Sbjct 297 CGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCA 238 Query 21668 GCGCGATAAAAAAGTCAGTGAACTGAAGCAGGCGACCGCCACCATTACTGACATGCAGCA 21727 |||||| ||||| | ||| |||||||||| ||||| ||| | ||||||||||||||| Sbjct 237 GCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGAT 178 Query 21728 GCGCCAGCGTGATGCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAA 21787 |||||||||||||| || |||||| |||| ||||||||||||||||||||| ||||||| Sbjct 177 GCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAA 118 Query 21788 AGCTGAAAATGATGCTCTTCG 21808 |||||||||||||||||| || Sbjct 117 AGCTGAAAATGATGCTCTGCG 97 >seq846 Length=12855 Score = 100 bits (110), Expect = 8e-17 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Plus Query 5127 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTACGAG 5186 ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 1691 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 1750 Query 5187 GATG----TTATTGCTGC 5200 |||| | |||||||| Sbjct 1751 GATGCTGTTCATTGCTGC 1768 >seq2747 Length=1393 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3317 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3368 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 24 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135599368986120