Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq1940 221 7e-53 seq3473 212 4e-50 seq1272 113 3e-20 seq46 98.7 6e-16 seq90 91.5 9e-14 >seq1940 Length=14353 Score = 221 bits (244), Expect = 7e-53 Identities = 255/338 (75%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 72306 CGACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCC 72365 ||| ||||| ||||||||| | |||||||| || ||||| ||||| ||||||| ||| | Sbjct 12929 CGAAACCGTCATCACCGTGGTGGGAAACCTCACGGCCGACCCCGAGCTGCGCTACACGCA 12870 Query 72366 CTCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCCCGGTACTTCGACAA-GC 72424 || |||||| || ||||||||| ||||| || || ||| |||||||| || Sbjct 12869 GAACGGGCTGCCGGTGGCGAACTTCACCATCGCATCGACGCCTCGGAACTTCGACCGTGC 12810 Query 72425 AGAGCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACA-TCTGGCGCGAG 72483 | | || ||||||||||||| ||| ||||| ||||| || |||| | ||||||||||| Sbjct 12809 CGCG-AATGAGTGGAAGGACGGCGATGCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGAG 12752 Query 72484 CCGGCCGAGAACGTCGCCGAGTCGCTGACCAAGGGCATGCGCGTCATCGTCCAGGGACGC 72543 |||||| |||| || | ||| |||| ||||||||||||||||||| ||||| || Sbjct 12751 TTCGCCGAGCACGTGGCGGGTTCGTTGACGAAGGGCATGCGCGTCATCGCGCAGGGCCGT 12692 Query 72544 CTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAG 72603 || |||||| |||| || || ||| | | || || | |||||||| ||| Sbjct 12691 CTGCGTCAGCGCTCCTACCAGGACCGCGAGGGCAACCAGCGCACCGCGATCGAGCTGGAG 12632 Query 72604 GTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72641 ||||| |||||||||||| |||| |||||||| ||||| Sbjct 12631 GTCGACGAGATCGGCCCCTCGCTCCGGTACGCGACCGC 12594 >seq3473 Length=4258 Score = 212 bits (234), Expect = 4e-50 Identities = 697/1083 (64%), Gaps = 71/1083 (7%) Strand=Plus/Plus Query 47664 TGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTG 47723 ||||||||||||| || ||| | || || |||||||| || ||| |||||| || | Sbjct 1581 TGCCGTTCATCCACCCGCACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGA 1640 Query 47724 CCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 47783 | |||||| |||| || || ||| | | ||| | ||||| ||||| |||||||| |||| Sbjct 1641 CGGTCGGCTCGGTCATCCCGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACA 1700 Query 47784 TCGGCTGCGGCATGATCGGCGTGGAGACCTGGGTCCAGAAGAACGACATCGCAGATCTCA 47843 |||||||||| ||||||| ||| || | || || || |||| ||| | || Sbjct 1701 TCGGCTGCGGGATGATCGCCGTTCGTACGCCGTTCACGAGGAGCGACGTCGACGGTCGTC 1760 Query 47844 GTCTCGCGGACCTGCGCGAACGGGTCGAGATCGCCATCCCGCTCTCGCCGGGGAACTACA 47903 | ||||| ||||| || || | | ||||| ||||||||| || ||| | || |||| Sbjct 1761 GGCTCGCCGACCTCCGGGAGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGTACA 1820 Query 47904 ACGTCGATGGGCGTTGGGCCGCGCACACCGAGGA---GCGCATTGCGCGGCTCGAGGCCA 47960 || | | || ||| ||| ||||| ||| |||||| | ||| ||| Sbjct 1821 ACCGC-AAGGTCGT--GGC------CACCGCGGAACCGCGCATCACCGAGCTGGAGCAGC 1871 Query 47961 TGGCCGAAGAGAAGGGCGTCGACCTCAAGCA-TTCGCC--GAAGTGGCGGGAACAGCTGG 48017 | ||||| |||| ||| |||||| ||| | |||| ||| ||||| ||| ||| Sbjct 1872 TCGCCGAGAAGAACGGCTTCGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGTTGG 1931 Query 48018 GCTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCACGAGCGTGGAC 48077 || ||||||| |||||||||||||||||| | ||| || | |||| | || Sbjct 1932 GCACGCTCGGTTCAGGCAACCACTTCATCGAG------GTGTCGGTCGATGAGC-TCGAT 1984 Query 48078 CGGGCGCGATCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTCGGCAACAAGATCGCGC 48137 |||| ||||||| |||||||| || ||| || || ||||||||||||||||| Sbjct 1985 CGGG-----TCTGGCTGTTCCTGCACTCGGGCTCGCGAGGCGTCGGCAACAAGATCGCCG 2039 Query 48138 AGAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATTCAACTCGCCAACC 48197 | | || ||||| || | || || ||| Sbjct 2040 GGCACCACATCGCCGTCGCCCAGCGGCTGGCGAGGCAGTGGTGGATCGACCTTCCCGACC 2099 Query 48198 CCGACCTCGCCTACCTGCCTTCCGGGACCGAC--GAATTCGGCGACTACATTCGCGAGCT 48255 ||||||| || |||||| || || | || || ||| | |||||| || ||||| Sbjct 2100 CCGACCTGGCATACCTG--GTCGAGGGCACACCGGAGTTCACCCGCTACATCCGGGAGCT 2157 Query 48256 CCGGTGGGCACAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACCGTTTCGTCCA 48315 |||||||| ||| |||||||| |||||||| || |||||||| || |||| Sbjct 2158 GCGGTGGGCCCAGCACTTCGCGCTGCTGAACCGGGAGGAGATGATGGATCG---CGTC-- 2212 Query 48316 TGTGTTCACCCGGTGGCTCGAGTACTCCGATGCCGTCGAATTCGACGAGCTCGGTCGCGA 48375 | | | |||| | |||| ||| ||| | | | |||| Sbjct 2213 ---ATCCGGCAGGTGTC-GGAGT--TCC-------TCGGA-------ACCCCGGT----- 2247 Query 48376 CGTCGAACTCCGGCGTATCAATTGTCACCACAACTACACCGAGCGGGTCGAGATCGCCGG 48435 || ||||| ||| ||||| || |||||||||| ||||||| || || | ||| Sbjct 2248 CGACGAACAGGAGCGCATCAACTGCCACCACAACTTCACCGAGTCGGAGAAGCACTACGG 2307 Query 48436 CAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGACT 48495 ||| | |||||| | | || ||||| || ||| | || || |||||| || || Sbjct 2308 GAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTCGACCGGGCCT 2367 Query 48496 GATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGG 48555 |||||||| || ||||| ||| || || || || | || || | | || | Sbjct 2368 CATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGT-----GGAAGGGCTCGGCGACCCG 2422 Query 48556 C-----CTCTTCTCTGCGCCCCATGGTGCCGGTCGTCAGTATTCGCGCACCCAGGCCAAG 48610 | || ||| | || || |||||||| || |||| || ||| | ||| | Sbjct 2423 CAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCTCGGCGGCGCGG 2482 Query 48611 AAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAATACCGCCACGGC 48670 | ||||| | || | || || |||| ||||||||| | ||| || | Sbjct 2483 CGGACCTTCACGCACGACCAGCTGCGAGAGGCGATGACGGGCATCGAGTTCCGTGACACC 2542 Query 48671 GAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGGAAGAT 48730 || | | ||||||||||||||| | || |||||| |||||||||||||||| ||| Sbjct 2543 GATGCCTTCATCGACGAGATCCCGCAGGCGTACAAGCCGATCGACCAGGTGATGGCGGAT 2602 Query 48731 GCC 48733 ||| Sbjct 2603 GCC 2605 >seq1272 Length=12228 Score = 113 bits (124), Expect = 3e-20 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 43259 TCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGA-AGGAA 43317 ||||||| ||||| | || ||||| |||||| | |||||||||||||| ||| | | Sbjct 9649 TCGACGCCGACCCCGAGGTCGACGTGATCATCATCGCCCGCGGCGGCGG--CGACCCGCA 9706 Query 43318 GAC-CTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGC-GTCTGCAACCC 43375 ||| || ||| | ||||||| ||||| || || | ||| |||| | |||| Sbjct 9707 GACGCTGCTCGGCTTCAGCGACGAGAAGCTGGTGCGAGCGGTCGCCGCGGTCT-CCACCC 9765 Query 43376 CGGTTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACC 43435 |||| ||| |||||| || |||||||| || | ||||| |||||| ||| | || | Sbjct 9766 CGGTGGTGAGTGCGATCGGGCACGAGAACGACCACCCGCTGCTCGACGACGTGGCCGATC 9825 Query 43436 TTCGAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACGT 43484 | || || | || ||||| || || |||||||| ||||| |||||||| Sbjct 9826 TGCGCGCCTCGACCCCGACCGACGCCGCGAAACGCGTCGTGCCCGACGT 9874 >seq46 Length=239904 Score = 98.7 bits (108), Expect = 6e-16 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 47663 CTGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCT 47722 ||||| ||||| | ||| |||| ||||||||| | ||| ||||| || | Sbjct 145162 CTGCCCATCATCTACAAGCACATCGCGGCCATGCCGGACGTGCACTACGGCATCGGTGCC 145103 Query 47723 GCCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 47782 | || || |||||||||| || | | ||||||||||||||||| || ||||||||| Sbjct 145102 ACGGTGGGTTCGGTGATTCCGACCATCAAGGCCGTGATCCCGGCCGCCGTGGGCGTGGAC 145043 Query 47783 ATCGGCTGCGGCATGATCGGCGTG 47806 ||||||||||||||||| |||||| Sbjct 145042 ATCGGCTGCGGCATGAT-GGCGTG 145020 >seq90 Length=95466 Score = 91.5 bits (100), Expect = 9e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 47693 ATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTCGGCACGGTGATTCCCACGGTGGAC 47752 |||||||| | |||| |||||||| | |||| ||| ||||||| || || | | Sbjct 70129 ATGCCGGACGTGCACGTAGGCAAAGGGGCCACCGTGGGCTCGGTGATCCCTACCCGCGGC 70070 Query 47753 GCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATG 47797 || | || |||||||||||||||||||||||||||||||||||| Sbjct 70069 GCGATCATTCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATG 70025 Score = 84.2 bits (92), Expect = 1e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 47663 CTGCCGTTCATCCATCCTCACG-TCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATC 47721 ||||| |||||||| || | | || | | ||||| || | ||| ||||| || | Sbjct 11467 CTGCCCTTCATCCA-CCGCTGGATCTCGGTGATGCCCGACGTGCACCTGGGCAAGGGCGC 11525 Query 47722 TGCCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGA 47781 || ||||| ||||| | ||||| | | ||| | |||||||| || || |||||||| Sbjct 11526 CACCATCGGCTCGGTGGTGCCCACCATCGGCGCGATCATCCCGGCGGCCGTGGGCGTGGA 11585 Query 47782 CATCGGCTGCGGCATGATCG 47801 |||||||||||||||||||| Sbjct 11586 CATCGGCTGCGGCATGATCG 11605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300135020157588