Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq351 273 5e-69 seq234 228 2e-55 seq98 104 5e-18 >seq351 Length=183164 Score = 273 bits (302), Expect = 5e-69 Identities = 441/637 (69%), Gaps = 28/637 (4%) Strand=Plus/Minus Query 31613 ACTGACAGTTCGCGCATCGCCGCTGTTGCCAGAAAGCCCGACCGAGACTGATAGCGCTTA 31672 || || |||||||||| ||||| || ||||| || || || || || |||||| | Sbjct 123527 ACGGAAAGTTCGCGCAAAGCCGCCGTCGCCAGGAACCCAGAGCGCGAGGCATAGCGATGG 123468 Query 31673 TCCACCTTCACGCGCTCATCGATCCGCTGCAGAAGGTGTTCCGGGAGCGTCGCATTAAAG 31732 || | ||| ||||||||||| || | || ||| || || || || | || || || Sbjct 123467 TCTTTTTGCACTCGCTCATCGATACGATTCAAAAGTTGCTCAGGCAGTGAGGCGTTGAAC 123408 Query 31733 CGTACGGCCTTGCCCAGGTACGGGGTCACGTCGAAGTCAACCACCGCCCATACGCCACCT 31792 | || | |||||||||||| || || | || ||||| | ||||||||| |||||||| Sbjct 123407 CTGACTGACTTGCCCAGGTAAGGAGTGAGATCAAAGTCGATCACCGCCCACACGCCACCC 123348 Query 31793 TCGAAGTCCGGATTCTTCATATGGGCGTCAACGTCCTGCGGCTGGGGTAGCTCTTCGCCG 31852 | ||||||||||||| || |||| |||| || || | ||| || ||| || | Sbjct 123347 GCAAAGTCCGGATTCTCCAAATGGACGTCGACCTCTCTAGCCTGAGGAAGCCGCTCCTCA 123288 Query 31853 TCCGTAACCAAGCCTTCGAAGTGCAAGGCCAGCGCCTCTTCTACATTGGCCAGGGCCTCG 31912 || | |||||| || |||| ||||| || | || || ||||| |||| || ||| Sbjct 123287 TCAGCAACCAATCCCTCGAGGTGCAGCGCTAAAGCTTCGCGGACATTATCCAGAGCTTCG 123228 Query 31913 GACACCGTAGCGCCGGCAGAGAAGCAACCCGGCACATCGGGCACAGTCACGCCATAGTCA 31972 || | || | ||| ||||| |||||||| ||||| || || || ||||||| || || Sbjct 123227 GAAAAGGTTGTGCCCGCAGAAAAGCAACCTGGCACGTCCGGGACGGTCACGCTGTAATCT 123168 Query 31973 GAATCAGGGTCTTTGTGTAACACCACGGGGAATTTCATGGCT-CTACTCCG--TGAG--- 32026 ||||||| ||||||||||| |||||| || |||||||| | || || | |||| Sbjct 123167 GAATCAGCGTCTTTGTGTATCACCACTGGAAATTTCATTTTTCCTCCTTTGAATGAGCCG 123108 Query 32027 ----------ATTGACC------------GGCCTCACTTGAGGCCGGCTTGTTTCAGTAT 32064 ||| ||| | | |||||| ||||| ||| ||||| || Sbjct 123107 CAGCGGGATCATTCACCACATAACCTACGGTCATCACTTCAGGCCTGCTGATTTCAAAAT 123048 Query 32065 GTTGTTCAGGGTTCCTTTCGGTATCGTCGAGGACGGATGTTGAACCGTCACCTTTCCAGG 32124 | ||| || ||| || || | |||| || ||||| ||||||||||| || || Sbjct 123047 GCTGTGCAAGGTCCCCTTGGCTATCTCTGATTTAGGATGAGGAACCGTCACCCGGCCGGG 122988 Query 32125 CTTTGAAGGATGTTTGAACTGGTGGTGGCTACCTTTCACCGCCACTTCATACCAGCCATC 32184 ||| | | || ||||| || ||||| || |||||| ||||||| ||| |||| ||||| Sbjct 122987 CTTGGTTGAGTGCTTGAATTGATGGTGACTGCCTTTCGCCGCCACCTCAAACCATCCATC 122928 Query 32185 CTCCAACAGCAAATCAATCACTTCCCTACTCCGCATC 32221 | ||| |||||| ||||| || || || || | |||| Sbjct 122927 CGCCATCAGCAAGTCAATTACCTCTCTGCTTCTCATC 122891 Score = 147 bits (162), Expect = 5e-31 Identities = 105/121 (87%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 2850 CTGGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTT 2909 ||| |||||||||||||||| ||||||||||| ||||||||||||| |||||| |||| Sbjct 124361 CTGAGGGCCTATAGCTCAGTTGGTTAGAGCAGGGGACTCATAATCCCTTGGTCGTAGGTT 124302 Query 2910 CGAGTCCGTGTGGGCCCACCACCTTCAAAGCCGCGCACTGCGCGGCTTTCGCCTTTCTGG 2969 ||||||| ||||||||||| ||| ||||||||||| ||||||||||| | ||||||| Sbjct 124301 CGAGTCCTACTGGGCCCACCATCTTGAAAGCCGCGCATTGCGCGGCTTTGTCGTTTCTGG 124242 Query 2970 C 2970 | Sbjct 124241 C 124241 >seq234 Length=62246 Score = 228 bits (252), Expect = 2e-55 Identities = 785/1208 (65%), Gaps = 42/1208 (3%) Strand=Plus/Minus Query 1124 GTGGCACGACATCGACTGGTGTCGG-GTCCAGCGGAATGTCCGGGGAATGCAGGTACGGA 1182 |||| || |||||| ||| ||| || || || |||| | || |||| | || | Sbjct 30612 GTGGGACAGCATCGATTGGA-TCGCCGTACAACGTCGTGTCAGAGGGCTGCAAGCGCGTA 30554 Query 1183 TTGCGAAGGCTTGTCGGGAAGGCAAATGGCGCAGGGTGAAGGCCCTACAACGGATGCTGA 1242 ||| ||||||| | || |||| | || |||||| ||||| ||| || |||||| Sbjct 30553 TTGTGAAGGCTGTACAAGATGGCAGACATAACAAGGTGAAAGCCCTGCAATGGCTGCTGA 30494 Query 1243 CCCGCTCGA-CGTCGGCCAGGTACCTGGCTGT---ACGGAGAGTCACTGAAAACCAGGGC 1298 | | |||| | ||| ||| | || |||| |||| || |||||||| | ||| Sbjct 30493 CTCACTCGTTCAGTGGCAAGGCATTTG-CTGTGAAACGG---GTGTCTGAAAACAAAGGC 30438 Query 1299 AAGCGCACGGCGGGAGTCGACCGCGTGCTCTGGGATACGCCTGACACCAAGTGGAAAGCG 1358 || || | || || ||| || ||| |||||||| ||||| ||| Sbjct 30437 AAAAATACCCCCGGCGTGGACAAGGTTACTTGGAATACGCCTAGGGCCAAGCTCGGCGCG 30378 Query 1359 GCACAAGGGTTGAAAAGGCGCGGGTACCAACCTCGGCCTCTACGGCGAGTGTTCATCCCG 1418 | | ||||| |||| || ||| || | || || ||| ||||| | || ||| Sbjct 30377 ATAGAGTCGTTGACGCGGCGAGGTTACTCGCCGCTCCCGCTTCGGAGAGTGCTTATTCCG 30318 Query 1419 AAGTCGAACGGAAAGGAGCGCCCCCTGGGTATCCCGACCATGACTGACAGGGCAATGCAG 1478 ||| ||||| || | | || || || || || | |||| | |||| |||||| Sbjct 30317 AAGAAAAACGGCAAAACGAGACCTCTTGGAATTCCCGCGATGAAATGCCGGGCCATGCAG 30258 Query 1479 GCACTCTACCTGCTCGCTCTGTCGCCCATTGCAGAAACCACCGGCGATCCGAACAGCTAT 1538 || || | ||||| |||||| || || || ||||| |||||||| |||||| ||| Sbjct 30257 GCGCTTCATCTGCTGGCTCTGGAACCGATAGCGGAAACTACCGGCGACCCGAACTCTTAT 30198 Query 1539 GGCTTCAGGATCGAGCGATCCACGGCGGATGCAATGTCCCAGTTGTTCGTTTGCCTATCC 1598 || |||||| || || || || |||||||| | | |||| || | | || || Sbjct 30197 GGGTTCAGGCCGGAACGCTCAACTGCGGATGCCGTCGCACAGTGCTTTGGTGTGCTGTCA 30138 Query 1599 GGAAAGGCTTCGGCCCAATGGATACTGGAGGCGGACATACAAGGGTGTTTTGACCACATC 1658 |||| || || ||||| | | |||| ||||| ||||| ||||| ||| | ||| Sbjct 30137 CGAAAAGCAAACGCGGAATGGGTGTTAGAGGGCGACATTCAAGGCTGTTTCGACAATATC 30078 Query 1659 AATCATGACTGGCTACTGAACCATGTCCCCACGGACAAGGTGATCCTCCGGAAATGGTTG 1718 | ||||||||| | | | | | |||| |||||||| ||| | | ||||||| | Sbjct 30077 AGCCATGACTGGTTGATCGCCAACATTCCCATGGACAAGGCGATTTTGCAGAAATGGCTC 30018 Query 1719 AAGGCCGGCGTGATCCACAAAGGCCAGCT----CCAGGCAACGGATGCTGGAACACCTCA 1774 ||| || || || || ||||| || || ||| | ||||| || || Sbjct 30017 CGGGCTGGTTATGTCTACCAAAAGCAGCTATTCCCCAGCCACG----CCGGAACCCCGCA 29962 Query 1775 AGGCGGAATCATCTCGCCTACTTTGGCAAACATGGTGCTCGATGGCCTGGAATCACAGCT 1834 || || ||||| || || ||||| |||||| ||| ||||| ||||| | ||| Sbjct 29961 GGGAGGCATCATATCCCCGGGGTTGGCGAACATGACGCTGGATGGGTTGGAAGCGATGCT 29902 Query 1835 C---AAGCGA-----CACCTGGGCGTGACAAGGGCGAAGAAGCTGAAACTCAATGTGGTG 1886 ||| || || | | ||| || |||| || || | | |||||| Sbjct 29901 GGCGAAGAGATTTCCCAACGCGAAGTGGACAGCCCGAAAAA--TG---CGC---GTGGTG 29850 Query 1887 CGCTATGCGGACGACTTCGTCATCACCGGTGTCTCTCCCGAGGTACTGGAGAAAGAAGTC 1946 || ||||| || || ||| ||||||| ||| || || |||||||| |||||| Sbjct 29849 CGTTATGCAGATGATTTCATCATCACTGGTTGTTCGAAAGAATGGCTGGAGAATGAAGTC 29790 Query 1947 AAACCCTGGGTAGAGCAGTTCCTGGCGGTACGCGGGCTGCAGCTCTCTCTGGAGAAAACG 2006 | ||| || | | || ||||| | || || || ||||||| ||| ||||| Sbjct 29789 AGGCCCGCCGTGGTTGAATTTCTGGCAGAGCGTGGACTTGTCCTCTCTCCGGAAAAAACC 29730 Query 2007 CGGATCGCCCACATAGATCAGGGCTTCGACTTCCTCGGTTGGAACTTCCGCAAGTACAAC 2066 ||| | ||||||| | || |||||||||||||| |||||| | |||||||||||| Sbjct 29729 AAGATAACGCACATAGGGGACGGGTTCGACTTCCTCGGATGGAACCTGCGCAAGTACAAC 29670 Query 2067 GGGAAGCTTCTGATCAAACCCAGCCAGAAGAAC-GCGAAAGCGTTCTAC--GGCAAGGTG 2123 || ||||| |||||||| || | || |||| || | | ||||| | |||| || Sbjct 29669 GGCAAGCTCCTGATCAAGCCGTCCAAGGCGAACATCG---GGGCTCTACTTGCCAAGCTG 29613 Query 2124 AAGGAGGTCATCGAAACCAGCAGGACGGCAAGGCAAGAGGACTTGATCCGAACGCTGAAT 2183 ||| | ||| | |||| || ||| | | || | ||||||| | ||| || Sbjct 29612 CGAGAGTTGATCAAGACCAACAAAACGATACGACAGGCTAACTTGATAGGTTTGCTCAAC 29553 Query 2184 CCGATTCTGCGCGGCTGGGCGCTGTATCACCAGCCA-GTGGTTGCCAAGCAAACGTTCAG 2242 ||| |||| || ||||||||| ||||| ||| || || || |||||| | |||| Sbjct 29552 CCGGTTCTACGGGGCTGGGCGAACTATCA-CAGTCATGTCGTCGCCAAGAAGGTCTTCAA 29494 Query 2243 CCGCATGGACAACAGAGTGTTTCTCAAGCTCTGGCGTTGGGCGAAACGGCGGCACCCGAA 2302 || |||||| | ||||| | ||||||||| |||||| ||| || ||||| Sbjct 29493 CCAGGTGGACAGCGCAGTGTGGGAAATGCTCTGGCGATGGGCGGTACGTCGCCACCCTCG 29434 Query 2303 CAAGTCAC 2310 |||| ||| Sbjct 29433 CAAGACAC 29426 Score = 100 bits (110), Expect = 6e-17 Identities = 138/191 (72%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 740 CAGTCAG-GGAACGTGGTAAGCCCGTATCGCCGCCCTCGGGGCAGGGGAGCCGTAAGGCG 798 |||| || ||||||||| || |||||||||| || || ||| | |||||| | Sbjct 30875 CAGTAAGCGGAACGTGGAAATCCCGTATCGCTCCCGTCAGGGAA----AGCCGTTTGTAA 30820 Query 799 AACTGT----TGGCGGTGCGGGTATGGGATCGCAGAGAAAGCGAACGCCAGGCTGTAATC 854 || | |||||||||||| ||| || || |||||||||||| ||||||| Sbjct 30819 AAATTGCCCATGGCGGTGCGGGCGAAGGAACGAGGAAAAAGCGAACGCCGTCCTGTAATG 30760 Query 855 GTCTGGATAGGGGTTGGAACATCACCCCACGGGAAACCGGGCAGACTTCTGCGTGGTCTT 914 | ||||||| ||||| |||||||| |||| |||| ||||||||| || | |||||| Sbjct 30759 GGTTGGATAGAGGTTGAAACATCACTTCACGCGAAAGCGGGCAGACGTCCTCATGGTCTC 30700 Query 915 TCGTCGCAAGA 925 || || || || Sbjct 30699 TCTTCACACGA 30689 >seq98 Length=166217 Score = 104 bits (114), Expect = 5e-18 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 2852 GGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCG 2911 |||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| Sbjct 106480 GGGGGCCTATAGCTCAA-CGGTTAGAGCAGAGGACTCATAATCCTTTGGTTGAAGGTTCG 106538 Query 2912 AGTCCGTGTGGGCCCACCA 2930 | ||| | ||||||||||| Sbjct 106539 AATCCTTCTGGGCCCACCA 106557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104304007304826