Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030942.1 Length=55524 Score E Sequences producing significant alignments: (Bits) Value seq2504 113 2e-20 seq8385 87.8 6e-13 >seq2504 Length=31563 Score = 113 bits (124), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 42798 GCATGGCACGACGACGCTCTCTGCTCGCAGGTTGATGTGGGGGACATGTTCTTCCCTGAG 42857 || ||||| ||||||||||||||||||| || || || ||||||||| ||| Sbjct 30801 GCCTGGCAGAGCGACGCTCTCTGCTCGCAGACCGACCCGGAGGC---GTTCTTCCCCGAG 30857 Query 42858 AAGGGTGGATCGACCGCAGAAGCCAAAACGATCTGCGCCGGGTGTGATGTGCGCGAACAG 42917 |||||||||||||| || ||||| ||||||| | ||| || || |||| || Sbjct 30858 AAGGGTGGATCGACGAGGGACGCCAAGCGGATCTGCACGTCGTGCGACGTCCGCGGGGAG 30917 Query 42918 TGCCTGGAATGGGCGCTCGAGAACCAAGAACGGTTCGGGATCTTCGGGGGCAAGTCGGAG 42977 |||||||||| || ||| | ||| | || |||||||| |||| || ||| ||| ||| Sbjct 30918 TGCCTGGAATACGCTCTCAACAACGATGAGCGGTTCGGCATCTGGGGTGGCCTGTCCGAG 30977 Query 42978 CGTGAACGCCG 42988 || || ||||| Sbjct 30978 CGCGAGCGCCG 30988 >seq8385 Length=500 Score = 87.8 bits (96), Expect = 6e-13 Identities = 52/53 (98%), Gaps = 1/53 (2%) Strand=Plus/Plus Query 31105 TGGAGCCGATGACGGGAATCGAACCCGCGTATTCAGCTTGGGAAGCTG-TGTT 31156 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 293 TGGAGCCGATGACGGGAATCGAACCCGCGTATTCAGCTTGGGAAGCTGATGTT 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 177533425850964