Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq64 105 2e-18 >seq64 Length=260832 Score = 105 bits (116), Expect = 2e-18 Identities = 239/355 (67%), Gaps = 16/355 (5%) Strand=Plus/Plus Query 53027 TCGGCTTTGAACAGCGAGTTGAACGCCTCAGCCATCGCGTTGTCGTATGAATCCCCTTTG 53086 ||||| ||| | || ||||| | ||| |||| ||||||||| | || || || | Sbjct 171470 TCGGCCTTGTAGAGGCCGTTGATGGTCTCGGCCAGTGCGTTGTCGAACGAGTCGCCCACG 171529 Query 53087 GAGCCAACAGATGTCACCGCTTCGGCTTCGGCCAGTCGTTCGGTGTAGCGGATGGCTCGG 53146 ||| ||||| | | || | || |||||||| || |||||||| ||||| | | Sbjct 171530 CTGCCCACAGAGGGCTCCAGGCCCGCCTCGGCCAGCCGCTCGGTGTATCGGATCGACACG 171589 Query 53147 TATTGCACTCCGCGGTCGGAGTGGTGGATCAGCCCGGCCACGTCGTGGCCGGCACGCGAC 53206 || || || || |||||| ||||||||||| ||| | || ||||| | || | Sbjct 171590 TACTGGACGCCTCGGTCGCTGTGGTGGATCA----GGCGA--TCCGGGCCGACCGGCTTC 171643 Query 53207 CGTGCCCACAATCCCATGTTC-AGGGCGTCGAGGGCGAGGTCGGTGTGCATGGTGGTCGA 53265 | || |||| | | || || || |||||||| ||| ||| || ||||| | | || Sbjct 171644 CTCGCGTACAA-CGCCTGCTCGAGCGCGTCGAGCACGAAGTCCGTCTGCATCGAGCAGGA 171702 Query 53266 GACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGAACGCCGCGTACACCCA 53325 | ||| |||||| |||| || | ||||||||| | |||||| || |||| ||||| Sbjct 171703 GGCCTTCCAGCCCACGATGCGACGGGCGAACACGTCGATGACGAAAGCGACGTAGACCCA 171762 Query 53326 GC----CCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACGCGTTCGG 53376 | || ||| | || ||| || | ||| ||||||| ||||||||| Sbjct 171763 TCCTTGCCAAGTCG----AGACGTACGTGAAGTCGCTGACCCACAGCGCGTTCGG 171813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175824835406448