Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq3870 89.7 6e-13 seq2070 82.4 8e-11 seq56 82.4 8e-11 >seq3870 Length=345 Score = 89.7 bits (98), Expect = 6e-13 Identities = 200/298 (67%), Gaps = 12/298 (4%) Strand=Plus/Minus Query 160542 ATATCAGGATACATCCTTTTGCTTGCGCACTCTAAAGCAAGCTGCTTAATATCATAGTTC 160601 ||||| |||||||| | |||||||||||||| | || ||||| || || || |||||| Sbjct 301 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 242 Query 160602 GGATCGTCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAAA 160658 |||||| |||| | | | || | ||| || || ||||| || || || ||||| Sbjct 241 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCAAAC---ACCAGTTTCGGGAAC 185 Query 160659 ATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 160718 | | |||| | | | ||| || ||| ||||| || ||| || | || |||| Sbjct 184 ACCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATCGATTCCTGA 125 Query 160719 ATCATTCG---TTCAGTCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTC 160775 |||| || ||| |||| || ||| |||||| || |||||||| || ||| Sbjct 124 ATCAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTC 68 Query 160776 TGTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGT 160833 || ||||| | | || || |||||||| || || | ||||| ||||||| Sbjct 67 TGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGT 10 >seq2070 Length=16073 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 17110 GCGGCAGGATTTGAACCTGCGACATTCTGCTCCCAAAGCAGACGCTCTACCAAACTGAGC 17169 ||| ||||| ||||||||||||| | | ||||||||||| | |||||||||||||||||| Sbjct 3130 GCGACAGGAGTTGAACCTGCGACCTCCCGCTCCCAAAGCGGGCGCTCTACCAAACTGAGC 3189 Query 17170 TAC 17172 ||| Sbjct 3190 TAC 3192 >seq56 Length=468132 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 16947 GGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCTACTGAGCTAAATCA 17006 ||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| | | Sbjct 224480 GGAATCGAACCCTCGACCTTCTCATTACAAGTGAGCTGCTCTACCAACTGAGCTACACCG 224421 Query 17007 GCG 17009 ||| Sbjct 224420 GCG 224418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545881524421200