Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq250 178 2e-39 seq5011 129 9e-25 seq1432 120 5e-22 seq276 89.7 8e-13 seq120 84.2 3e-11 >seq250 Length=59172 Score = 178 bits (196), Expect = 2e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 202540 GAAAAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTT 202599 |||||| ||||| |||||||||||||||||| | ||||||| |||||||| || Sbjct 46912 GAAAAGTCCGACCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTC 46853 Query 202600 GACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATT 202659 ||||| ||| |||||||| ||||| ||||| || ||| | ||||| || || ||||| Sbjct 46852 AACCTGGGCGACGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGGTCGATCATC 46793 Query 202660 CACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGG 202719 || |||||||||||||||||||| || |||||||||||| | ||||| | ||| ||| | Sbjct 46792 CATGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTCACCGACAACCAG 46733 Query 202720 GTCACTATCTGGGACGAATGGGC 202742 || ||||||||||| ||||| Sbjct 46732 GTGCGCATCTGGGACGAGTGGGC 46710 >seq5011 Length=2423 Score = 129 bits (142), Expect = 9e-25 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||||||||| || ||||| || ||| | ||||| ||||||||| || || ||| | Sbjct 953 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 894 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 | || || || |||| || || || | || ||| || ||||| ||||||||| Sbjct 893 GCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCTG 834 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 ||||||||||||||||| || || |||||| || || || || ||||| || || ||| Sbjct 833 CTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGATC 774 Query 202729 TGGGACGAATGGGC 202742 ||||| |||||||| Sbjct 773 TGGGATGAATGGGC 760 >seq1432 Length=12607 Score = 120 bits (132), Expect = 5e-22 Identities = 186/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 203290 CTATCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATC 203349 || ||||||||| ||||||||||||||||||| | ||| | || |||||||| |||||| Sbjct 8828 CTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATC 8887 Query 203350 GCCTCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAG 203409 ||||| || || || ||||| |||| | || |||||||| | | | | ||| || Sbjct 8888 GCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGAGAC 8947 Query 203410 TTCGTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTG 203469 ||||||||||| ||||| || || | || ||| || | || |||| || | Sbjct 8948 TTCGTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGGTGCGGGAG 9007 Query 203470 CAGTTAACTCGTGACCCGCACCCATTACCGCGTCTGAAATTCAAACGTAAGCCCGAGTCT 203529 ||| | | ||||| || |||| | ||| ||| ||| || |||||||| || Sbjct 9008 CAGCTCAGCCGTGAGCCCTACCCCTACCCGACGCTGCGTTTCGCGCGGAAGCCCGAATCG 9067 Query 203530 ATCTTCGACTACCAGTTCGAAGACTT 203555 || ||||||||| | || ||||| Sbjct 9068 ATTCTCGACTACCGCTATGAGGACTT 9093 >seq276 Length=69181 Score = 89.7 bits (98), Expect = 8e-13 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 2256 GGCGGGTTACTCAAGCGGC-AACGAGAGCAGACTGTAAATCTGTTGACTTCGGTCTTCGG 2314 || ||| ||| |||||||| |||| | |||||||||||||||| || ||| | |||||| Sbjct 694 GGAGGGATACCCAAGCGGCCAACGGGGGCAGACTGTAAATCTGCTGGCTTACGCCTTCGG 635 Query 2315 TGGTTCGAGTCCACCACACGCCACCAGTT 2343 |||||||| |||||| | | ||||||||| Sbjct 634 TGGTTCGAATCCACCTCCCTCCACCAGTT 606 >seq120 Length=487886 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 |||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 108181 GTAGTTCAGCTGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCGT 108240 Query 2771 C 2771 | Sbjct 108241 C 108241 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2711 GTAGCTCAGACGGTTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAAACCCGT 2770 |||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 110297 GTAGTTCAGCTGGTTAGAATGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCGT 110356 Query 2771 C 2771 | Sbjct 110357 C 110357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 788218237742000