Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq3870 84.2 2e-11 seq2070 82.4 8e-11 seq56 82.4 8e-11 >seq3870 Length=345 Score = 84.2 bits (92), Expect = 2e-11 Identities = 199/298 (67%), Gaps = 12/298 (4%) Strand=Plus/Minus Query 108452 ATATCAGGATACATTCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTTC 108511 ||||| |||||||| | |||||||| ||||| || || ||||| || || || |||||| Sbjct 301 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 242 Query 108512 GGATCGTCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAAA 108568 |||||| |||| | | | || | ||| || || ||||| || || || ||||| Sbjct 241 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCAAAC---ACCAGTTTCGGGAAC 185 Query 108569 ATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 108628 | | |||| | | | ||| || ||| ||||| || ||| || | || |||| Sbjct 184 ACCGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATCGATTCCTGA 125 Query 108629 ATCATTCG---TTCAGTCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGAGTC 108685 |||| || ||| |||| || || |||||| || |||||||| || ||| Sbjct 124 ATCAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTC 68 Query 108686 TGTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGT 108743 || ||||| | | || || |||||||| || || | ||||| ||||||| Sbjct 67 TGACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGT 10 >seq2070 Length=16073 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 134471 GCGGCAGGATTTGAACCTGCGACATTCTGCTCCCAAAGCAGACGCTCTACCAAACTGAGC 134530 ||| ||||| ||||||||||||| | | ||||||||||| | |||||||||||||||||| Sbjct 3130 GCGACAGGAGTTGAACCTGCGACCTCCCGCTCCCAAAGCGGGCGCTCTACCAAACTGAGC 3189 Query 134531 TAC 134533 ||| Sbjct 3190 TAC 3192 >seq56 Length=468132 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 134308 GGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCTACTGAGCTAAATCA 134367 ||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| | | Sbjct 224480 GGAATCGAACCCTCGACCTTCTCATTACAAGTGAGCTGCTCTACCAACTGAGCTACACCG 224421 Query 134368 GCG 134370 ||| Sbjct 224420 GCG 224418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540579808894760