Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq3473 212 4e-50 seq1940 212 4e-50 seq1272 113 3e-20 seq64 105 4e-18 seq46 98.7 6e-16 seq90 91.5 9e-14 >seq3473 Length=4258 Score = 212 bits (234), Expect = 4e-50 Identities = 697/1083 (64%), Gaps = 71/1083 (7%) Strand=Plus/Plus Query 48171 TGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCTG 48230 ||||||||||||| || ||| | || || |||||||| || ||| |||||| || | Sbjct 1581 TGCCGTTCATCCACCCGCACCTGGCACTGATGCCGGACGCGCACCTCGGCAAGGGGGCGA 1640 Query 48231 CCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGACA 48290 | |||||| |||| || || ||| | | ||| | ||||| ||||| |||||||| |||| Sbjct 1641 CGGTCGGCTCGGTCATCCCGACGCTCGGCGCGATCATCCCCGCCGCCGTCGGCGTCGACA 1700 Query 48291 TCGGCTGCGGCATGATCGGCGTGGAGACCTGGGTCCAGAAGAACGACATCGCAGATCTCA 48350 |||||||||| ||||||| ||| || | || || || |||| ||| | || Sbjct 1701 TCGGCTGCGGGATGATCGCCGTTCGTACGCCGTTCACGAGGAGCGACGTCGACGGTCGTC 1760 Query 48351 GTCTCGCGGACCTGCGCGAACGGGTCGAGATCGCCATCCCGCTCTCGCCGGGGAACTACA 48410 | ||||| ||||| || || | | ||||| ||||||||| || ||| | || |||| Sbjct 1761 GGCTCGCCGACCTCCGGGAGCAGATCGAGCGCGCCATCCCCCTGTCGGCCGGCCGGTACA 1820 Query 48411 ACGTCGATGGGCGTTGGGCCGCGCACACCGAGGA---GCGCATTGCGCGGCTCGAGGCCA 48467 || | | || ||| ||| ||||| ||| |||||| | ||| ||| Sbjct 1821 ACCGC-AAGGTCGT--GGC------CACCGCGGAACCGCGCATCACCGAGCTGGAGCAGC 1871 Query 48468 TGGCCGAAGAGAAGGGCGTCGACCTCAAGCA-TTCGCC--GAAGTGGCGGGAACAGCTGG 48524 | ||||| |||| ||| |||||| ||| | |||| ||| ||||| ||| ||| Sbjct 1872 TCGCCGAGAAGAACGGCTTCGACCCGGCGCAGTACGCCGGGAACTGGCGTCTGCAGTTGG 1931 Query 48525 GCTCGCTCGGCGGCGGCAACCACTTCATCGAGCTGTGCGAGTCCGTGCACGAGCGTGGAC 48584 || ||||||| |||||||||||||||||| | ||| || | |||| | || Sbjct 1932 GCACGCTCGGTTCAGGCAACCACTTCATCGAG------GTGTCGGTCGATGAGC-TCGAT 1984 Query 48585 CGGGCGCGATCTGGCTCTTCCTGCATTCCGGCAGCCGCGGTGTCGGCAACAAGATCGCGC 48644 |||| ||||||| |||||||| || ||| || || ||||||||||||||||| Sbjct 1985 CGGG-----TCTGGCTGTTCCTGCACTCGGGCTCGCGAGGCGTCGGCAACAAGATCGCCG 2039 Query 48645 AGAAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGGCACATTCAACTCGCCAACC 48704 | | || ||||| || | || || ||| Sbjct 2040 GGCACCACATCGCCGTCGCCCAGCGGCTGGCGAGGCAGTGGTGGATCGACCTTCCCGACC 2099 Query 48705 CCGACCTCGCCTACCTGCCTTCCGGGACCGAC--GAATTCGGCGACTACATTCGCGAGCT 48762 ||||||| || |||||| || || | || || ||| | |||||| || ||||| Sbjct 2100 CCGACCTGGCATACCTG--GTCGAGGGCACACCGGAGTTCACCCGCTACATCCGGGAGCT 2157 Query 48763 CCGGTGGGCACAGGCTTTCGCGCTCGAGAACCGGGCCGAAATGATGGACCGTTTCGTCCA 48822 |||||||| ||| |||||||| |||||||| || |||||||| || |||| Sbjct 2158 GCGGTGGGCCCAGCACTTCGCGCTGCTGAACCGGGAGGAGATGATGGATCG---CGTC-- 2212 Query 48823 TGTGTTCACCCGGTGGCTCGAGTACTCCGATGCCGTCGAATTCGACGAGCTCGGTCGCGA 48882 | | | |||| | |||| ||| ||| | | | |||| Sbjct 2213 ---ATCCGGCAGGTGTC-GGAGT--TCC-------TCGGA-------ACCCCGGT----- 2247 Query 48883 CGTCGAACTCCGGCGTATCAATTGTCACCACAACTACACCGAGCGGGTCGAGATCGCCGG 48942 || ||||| ||| ||||| || |||||||||| ||||||| || || | ||| Sbjct 2248 CGACGAACAGGAGCGCATCAACTGCCACCACAACTTCACCGAGTCGGAGAAGCACTACGG 2307 Query 48943 CAAGAAAGTGTGGCTCACGCGCAAGGGTGCAATCGACGCAAGCGAGGGTCGATATGGACT 49002 ||| | |||||| | | || ||||| || ||| | || || |||||| || || Sbjct 2308 GAAGCAGGTGTGGGTGTCACGGAAGGGAGCCATCCAGGCGGACGCCGGTCGACCGGGCCT 2367 Query 49003 GATCCCCGGATCCATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGG 49062 |||||||| || ||||| ||| || || || || | || || | | || | Sbjct 2368 CATCCCCGGGTCGATGGGGACCGCCTCTTACGTGGT-----GGAAGGGCTCGGCGACCCG 2422 Query 49063 C-----CTCTTCTCTGCGCCCCATGGTGCCGGCCGTCAGTATTCGCGCACCCAGGCCAAG 49117 | || ||| | || || |||||||| || |||| || ||| | ||| | Sbjct 2423 CAGTCGCTGAACTCCTCCCCGCACGGTGCCGGACGGGAGTACTCCCGCTCGGCGGCGCGG 2482 Query 49118 AAGCTGTTCACCCTGGATGACCTCGCCGACCGAATGAAGGGCATCGAATACCGCCACGGC 49177 | ||||| | || | || || |||| ||||||||| | ||| || | Sbjct 2483 CGGACCTTCACGCACGACCAGCTGCGAGAGGCGATGACGGGCATCGAGTTCCGTGACACC 2542 Query 49178 GAAGAGTGGATCGACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGGAAGAT 49237 || | | ||||||||||||||| | || |||||| |||||||||||||||| ||| Sbjct 2543 GATGCCTTCATCGACGAGATCCCGCAGGCGTACAAGCCGATCGACCAGGTGATGGCGGAT 2602 Query 49238 GCC 49240 ||| Sbjct 2603 GCC 2605 >seq1940 Length=14353 Score = 212 bits (234), Expect = 4e-50 Identities = 253/338 (75%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 72619 CGACACCGTGATCACCGTGATCGGAAACCTGACCGCCGATCCCGAACTGCGCTTCACCCC 72678 ||| ||||| ||||||||| | |||||||| || ||||| ||||| ||||||| ||| | Sbjct 12929 CGAAACCGTCATCACCGTGGTGGGAAACCTCACGGCCGACCCCGAGCTGCGCTACACGCA 12870 Query 72679 CTCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCCCGCGGTACTTCGACAA-GC 72737 || |||||| || ||||||||| ||||| || || ||| |||||||| || Sbjct 12869 GAACGGGCTGCCGGTGGCGAACTTCACCATCGCATCGACGCCTCGGAACTTCGACCGTGC 12810 Query 72738 AGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCTGCAACA-TCTGGCGCGAG 72796 | | || ||||||||||||| ||| ||||| ||||| || |||| | ||||||||||| Sbjct 12809 CG-CGAATGAGTGGAAGGACGGCGATGCGCTGTTCCTCCG-TGCATCCGTCTGGCGCGAG 12752 Query 72797 CCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCGTCATCGTCCAGGGTCGC 72856 |||||| |||| | | ||| || | ||||||||||||||||||| ||||| || Sbjct 12751 TTCGCCGAGCACGTGGCGGGTTCGTTGACGAAGGGCATGCGCGTCATCGCGCAGGGCCGT 12692 Query 72857 CTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGACGGTCATCGAGCTCGAG 72916 || |||||| |||| || || ||| | | || || | |||||||| ||| Sbjct 12691 CTGCGTCAGCGCTCCTACCAGGACCGCGAGGGCAACCAGCGCACCGCGATCGAGCTGGAG 12632 Query 72917 GTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGC 72954 ||||| |||||||||||| |||| |||||||| ||||| Sbjct 12631 GTCGACGAGATCGGCCCCTCGCTCCGGTACGCGACCGC 12594 >seq1272 Length=12228 Score = 113 bits (124), Expect = 3e-20 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 44118 TCGACGCGGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGA-AGGAA 44176 ||||||| ||||| | || ||||| |||||| | |||||||||||||| ||| | | Sbjct 9649 TCGACGCCGACCCCGAGGTCGACGTGATCATCATCGCCCGCGGCGGCGG--CGACCCGCA 9706 Query 44177 GAC-CTCCTCCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGC-GTCTGCAACCC 44234 ||| || ||| | ||||||| ||||| || || | ||| |||| | |||| Sbjct 9707 GACGCTGCTCGGCTTCAGCGACGAGAAGCTGGTGCGAGCGGTCGCCGCGGTCT-CCACCC 9765 Query 44235 CGGTTGTGTCTGCGATTGGCCACGAGAATGATCGGCCGCTCCTCGACCGCGTTGTGGACC 44294 |||| ||| |||||| || |||||||| || | ||||| |||||| ||| | || | Sbjct 9766 CGGTGGTGAGTGCGATCGGGCACGAGAACGACCACCCGCTGCTCGACGACGTGGCCGATC 9825 Query 44295 TTCGAGCGGCAACTCCGACGGATGCAGCGAAACGTGTCGTACCCGACGT 44343 | || || | || ||||| || || |||||||| ||||| |||||||| Sbjct 9826 TGCGCGCCTCGACCCCGACCGACGCCGCGAAACGCGTCGTGCCCGACGT 9874 >seq64 Length=260832 Score = 105 bits (116), Expect = 4e-18 Identities = 239/355 (67%), Gaps = 16/355 (5%) Strand=Plus/Minus Query 7217 CCGAACGCGTTGTGGGTGGCGGACCTGACCTACATCCGCACCCACTCGG----GCTGGGT 7272 ||||||||| ||||||| ||| | || ||| || | ||| || | ||||| Sbjct 171813 CCGAACGCGCTGTGGGTCAGCGACTTCACGTACGTCT----CGACTTGGCAAGGATGGGT 171758 Query 7273 GTACGCGGCGTTCGTCCTGGACGTGTTCTCGCGGATGGTCGTCGGCTGGCAGGTCTCGAC 7332 |||| || |||||| | ||||||||| | || |||| |||||| ||| ||| Sbjct 171757 CTACGTCGCTTTCGTCATCGACGTGTTCGCCCGTCGCATCGTGGGCTGGAAGGCCTCCTG 171698 Query 7333 CACCATGCACACCGACCTCGCCCTCGACGCCCT-GAACATGGGATTGTGGGCACGGTCGC 7391 | | ||||| || ||| ||| |||||||| || || || | | |||| || || || Sbjct 171697 CTCGATGCAGACGGACTTCGTGCTCGACGCGCTCGAGCAGGCG-TTGTACGCGAGGAAGC 171639 Query 7392 GTGCCGGCCACGACGTGGCCGGGCTGATCCACCACTCCGACCGCGGAGTGCAATACCGAG 7451 | ||||| || | ||| ||||||||||| |||||| || || || ||| Sbjct 171638 CGGTCGGCCCGGA--TCGCC----TGATCCACCACAGCGACCGAGGCGTCCAGTACGTGT 171585 Query 7452 CCATCCGCTACACCGAACGACTGGCCGAAGCCGAAGCGGTGACATCTGTTGGCTCCAAAG 7511 | ||||| |||||||| || |||||||| || | || | | ||||| ||| | | Sbjct 171584 CGATCCGATACACCGAGCGGCTGGCCGAGGCGGGCCTGGAGCCCTCTGTGGGCAGCGTGG 171525 Query 7512 GGGATTCATACGACAACGCGATGGCTGAGGCGTTCAACTCGCTGTTCAAAGCCGA 7566 | || || | ||||||||| |||| ||| | ||||| || | ||| ||||| Sbjct 171524 GCGACTCGTTCGACAACGCACTGGCCGAGACCATCAACGGCCTCTACAAGGCCGA 171470 >seq46 Length=239904 Score = 98.7 bits (108), Expect = 6e-16 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 48170 CTGCCGTTCATCCATCCTCACGTCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATCT 48229 ||||| ||||| | ||| |||| ||||||||| | ||| ||||| || | Sbjct 145162 CTGCCCATCATCTACAAGCACATCGCGGCCATGCCGGACGTGCACTACGGCATCGGTGCC 145103 Query 48230 GCCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGAC 48289 | || || |||||||||| || | | ||||||||||||||||| || ||||||||| Sbjct 145102 ACGGTGGGTTCGGTGATTCCGACCATCAAGGCCGTGATCCCGGCCGCCGTGGGCGTGGAC 145043 Query 48290 ATCGGCTGCGGCATGATCGGCGTG 48313 ||||||||||||||||| |||||| Sbjct 145042 ATCGGCTGCGGCATGAT-GGCGTG 145020 Score = 87.8 bits (96), Expect = 1e-12 Identities = 173/248 (70%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 49015 CATGGGCACCAAGTCCTATGTCGTCCGCGGCAAAGGGAATGAGTCCGGCCTCTTCT-CTG 49073 ||||||| ||||| ||| |||| |||||||| || || | || || | ||| Sbjct 144335 CATGGGCGCCAAGAGCTACATCGTGCGCGGCAAGGGCAACCCGGAAAGCTTCATGAGCTG 144276 Query 49074 CGCCCCATGGTGCCGGCCGTCAGTATTCGC-GCACCCAGGCCAAGAAGCTGTTCACCCTG 49132 | || | || |||||||| || || || ||||| ||||||||||||||| ||| || Sbjct 144275 CAGCC-ACGGCGCCGGCCGCAAG-ATGAGCCGCACCAAGGCCAAGAAGCTGTACACGGTG 144218 Query 49133 GATGACC---TCGCCGACCGAATGAAGGGCATCGAATACCGCCACGGCGAAGAGTGGATC 49189 | |||| | |||| ||| ||||| | | |||| |||| | | || | |||| Sbjct 144217 GCCGACCAGGTGGCCG--CGACCGAAGG-CGTGGAATGCCGCAAGGACGCCAACGTGATC 144161 Query 49190 GACGAGATCCCGGACGCCTACAAGGACATCGACCAGGTGATGGAAGATGCCAAAGACCTG 49249 |||||||||||| || ||||||||||||||| |||||| | | | |||||| Sbjct 144160 GACGAGATCCCGATGGCGTACAAGGACATCGACGCCGTGATGCAGGCGCAGCAGGACCTG 144101 Query 49250 GTCGAAGT 49257 || ||||| Sbjct 144100 GTGGAAGT 144093 >seq90 Length=95466 Score = 91.5 bits (100), Expect = 9e-14 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 48200 ATGCCGGATGCACACGGCGGCAAAGGATCTGCCGTCGGCACGGTGATTCCCACGGTGGAC 48259 |||||||| | |||| |||||||| | |||| ||| ||||||| || || | | Sbjct 70129 ATGCCGGACGTGCACGTAGGCAAAGGGGCCACCGTGGGCTCGGTGATCCCTACCCGCGGC 70070 Query 48260 GCCGTGATCCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATG 48304 || | || |||||||||||||||||||||||||||||||||||| Sbjct 70069 GCGATCATTCCGGCCGCGGTCGGCGTGGACATCGGCTGCGGCATG 70025 Score = 84.2 bits (92), Expect = 1e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 48170 CTGCCGTTCATCCATCCTCACG-TCGCCCTCATGCCGGATGCACACGGCGGCAAAGGATC 48228 ||||| |||||||| || | | || | | ||||| || | ||| ||||| || | Sbjct 11467 CTGCCCTTCATCCA-CCGCTGGATCTCGGTGATGCCCGACGTGCACCTGGGCAAGGGCGC 11525 Query 48229 TGCCGTCGGCACGGTGATTCCCACGGTGGACGCCGTGATCCCGGCCGCGGTCGGCGTGGA 48288 || ||||| ||||| | ||||| | | ||| | |||||||| || || |||||||| Sbjct 11526 CACCATCGGCTCGGTGGTGCCCACCATCGGCGCGATCATCCCGGCGGCCGTGGGCGTGGA 11585 Query 48289 CATCGGCTGCGGCATGATCG 48308 |||||||||||||||||||| Sbjct 11586 CATCGGCTGCGGCATGATCG 11605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299632683389809