Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq19 329 4e-85 >seq19 Length=879724 Score = 329 bits (364), Expect = 4e-85 Identities = 810/1221 (66%), Gaps = 28/1221 (2%) Strand=Plus/Minus Query 77419 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACG 77478 || ||||||| ||||| ||||| | ||||| | | || ||| | ||| ||||| | Sbjct 585915 CGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCACTTTCAAATG 585856 Query 77479 GATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 | || | | || ||||| |||||||| |||||||| || || | ||||| ||||| | Sbjct 585855 GTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTGGTCTGT 585796 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | | | | |||||| |||||||||| | |||||||||||| || |||||||||| Sbjct 585795 GGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAATTTTAT 585736 Query 77599 TGAGATTTCTAACAAC----TACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTT 77654 | || || | | || ||| | || | || ||| || |||||| | Sbjct 585735 TCAGGTTCAGGGTAGCCTGATAGGTTA----CATCATATAATTTCTGATGATCAAACTCT 585680 Query 77655 CCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 || | || ||||| | |||||| | || || || ||||| || || ||||| | Sbjct 585679 CCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGT-- 585622 Query 77715 GCGTTGGCA---TATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGA 77771 | |||| | || | ||| || || ||||| || || || |||||| || || | | Sbjct 585621 -CTTTGGAAGTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAAA 585563 Query 77772 TTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTT 77831 ||||| |||||| || | || || || ||||| | | | | || || |||||| Sbjct 585562 TTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGTT 585503 Query 77832 TCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTT---G 77888 ||||||||||| || | ||| | ||| | || ||||| || | ||| | Sbjct 585502 TCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAATGGT---TTTACGG 585446 Query 77889 TATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCA 77948 || | ||| |||| || | ||||| || ||||| | || | ||| Sbjct 585445 GCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCAAAGCAATCT 585386 Query 77949 TCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGT 78008 ||| ||| ||| ||||| || || | || |||||| || | ||| | || | | Sbjct 585385 GCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACCCTT 585326 Query 78009 TTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCA 78068 |||| || || ||| || ||| || ||| |||| ||||| || | | ||||||| Sbjct 585325 CTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGAAGTTCTTCT 585266 Query 78069 TTTCCTGTATTCTTTTTA---AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCT 78125 || || || |||||| || || ||||| || | ||| | ||||||||| || Sbjct 585265 TTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGGCTCC 585209 Query 78126 AGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTG 78185 || || || || | | | || |||||| || ||||| || | ||| | |||||| Sbjct 585208 AGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGCGGTA 585149 Query 78186 TTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATA 78245 | ||| | ||| ||||||| || | ||| || || || || ||||||||| |||| Sbjct 585148 TCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACCAATA 585089 Query 78246 TAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGAT 78305 ||| ||| | || || || ||| ||| || || || || ||||| | | || Sbjct 585088 TAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTGTGAA 585029 Query 78306 ATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTA 78365 ||| |||| |||| || |||||||| || || || |||||||| ||| |||| | Sbjct 585028 ATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCATGGTC 584969 Query 78366 AGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGAT 78425 || | ||| ||| |||||||||| | | | || ||||||||||||| || || | | Sbjct 584968 AGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGGGGTT 584909 Query 78426 GCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCC 78485 |||||||||||||| ||| | || || || ||| |||| || ||| || || Sbjct 584908 GCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAATATCT 584849 Query 78486 CATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTA 78545 || ||||| ||||| || |||||||| |||| ||| || || | ||| || | || Sbjct 584848 TCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAAT-TTG 584790 Query 78546 TTATT-TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 78604 | || |||||||| || || |||||||| | |||||||| |||||||| | | || Sbjct 584789 TCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGAATCC 584730 Query 78605 AAAGTCTCTCTCGTAAATAAT 78625 ||| || || || |||||||| Sbjct 584729 AAAATCCCTGTCATAAATAAT 584709 Score = 217 bits (240), Expect = 2e-51 Identities = 583/879 (66%), Gaps = 13/879 (1%) Strand=Plus/Minus Query 47848 TTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 47907 |||||||||| ||||||||||||||||| || ||||| |||||||||| || || || Sbjct 584135 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 584076 Query 47908 TTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATT-CTGAA 47966 | |||||||||||||| ||||| |||| ||| ||||| || | || | || ||| | Sbjct 584075 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 584016 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 || ||| |||||||| || || ||||| | ||||| || |||||| || || Sbjct 584015 GCCA-TCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 583957 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATT 48086 || ||| || | || || |||| ||| || | |||||| || || || || Sbjct 583956 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 583897 Query 48087 A-TCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 | || ||| || ||||| || || || | |||| | | | || || Sbjct 583896 ATTCCATG-AACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGC 583838 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||| |||||||| | || |||||||| ||| || || ||| ||| || || || || Sbjct 583837 AAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGG 583778 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG-AAAAGAATATGC 48264 ||| || || | |||||| | ||| || || | | ||| ||| | ||||| |||| Sbjct 583777 CATCAGGCCTCTTTTTTTCAACCAGAAGATCG-AACAGAAGCTCCCGCTGAAGAAAATGC 583719 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACC 48324 |||| || || || || || | | || | || | | || | ||||| | Sbjct 583718 CTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATT---TCCGCCCTCAATCCAGC 583662 Query 48325 GTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 48384 | |||||| || || || |||||||||||||| | || |||| |||| || || Sbjct 583661 GCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCC 583602 Query 48385 AGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGT 48444 || |||||| | |||||||| || ||||| || | || ||| |||| |||| Sbjct 583601 TGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGT 583542 Query 48445 GAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCT 48504 | || ||||| || ||||| || || |||||||| | ||||| | | ||||| || Sbjct 583541 GGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTA-CT 583483 Query 48505 CCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || || | ||||| || | || |||||||| || || ||||| ||||||||||| Sbjct 583482 TCGCTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAA 583424 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 || | || ||| ||| |||| ||| | | | | || | ||||| || Sbjct 583423 AGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTG 583364 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 || | || | || | ||||||||| ||||| || ||| || || |||||||| Sbjct 583363 GTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACAT 583304 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 | ||| || ||| ||||| || || |||| |||||| Sbjct 583303 TTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 583265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694579126941280