Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq19 297 3e-75 >seq19 Length=879724 Score = 297 bits (328), Expect = 3e-75 Identities = 811/1230 (66%), Gaps = 38/1230 (3%) Strand=Plus/Minus Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGA--TCTTGCGC-TTCAAGACTA 76066 ||| || ||||||| ||||| ||||| | ||||| | | | |||| | |||| || Sbjct 585919 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCA---CTT 585863 Query 76067 TCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATA 76126 ||||| || || | | || ||||| |||||||| | |||||| || || | ||||| Sbjct 585862 TCAAATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACT 585803 Query 76127 GGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATA 76186 ||||| || | | | |||||| ||| |||||| | || ||||||||| ||| ||| Sbjct 585802 GGTCTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATA 585743 Query 76187 ATTTTATTGAGATTTCTGACAAC----TACTTTAACCACGTCCTTTAGTTTGAGAAAATC 76242 |||||||| || || | | | || || || || | || ||| || ||| Sbjct 585742 ATTTTATTCAGGTTCAGGGTAGCCTGATAGGTT----ACATCATATAATTTCTGATGATC 585687 Query 76243 AAATTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTAC 76302 ||| | ||| | || ||||| | | ||| | || || || ||||| || || || Sbjct 585686 AAACTCTCCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAAC 585627 Query 76303 CTCATTAGCATTG---GCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGT 76359 ||| | | ||| | ||| | ||| || || || || || || || ||||| || Sbjct 585626 CTCGT---CTTTGGAAGTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGT 585570 Query 76360 TCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGT 76419 ||| | |||||| |||||| || |||| || || ||||| | | | | || || Sbjct 585569 TCCTAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGT 585510 Query 76420 TCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGA 76479 ||| |||||||||||||| || | ||| | ||| | || ||||| || | Sbjct 585509 TCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGCTTTAAT----GG 585454 Query 76480 TTTGTA---TCGCTTC--TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCC 76534 ||| || | | || ||| |||| || | |||||| || ||||| | || Sbjct 585453 TTT-TACGGGCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA 585395 Query 76535 CAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCC 76594 | ||| ||| || || ||||| ||||| | || ||| || || | ||| Sbjct 585394 AAGCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCT 585335 Query 76595 TTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTA 76654 | |||| | |||| || || ||| || ||| || ||| |||| ||||| || | | Sbjct 585334 TCTACCCTTCTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAATCTCTGGCACGA 585275 Query 76655 CGTTCTTCATTTCCTGTATTCTTTTTA---AGATCTAGGAACTCCATAATATCAGAATGC 76711 ||||||| || || || |||||| || || || || || | ||| | |||| Sbjct 585274 AGTTCTTCTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGC 585218 Query 76712 CATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATAT 76771 ||||| || || || || || | | |||| |||||| || ||||| || | ||| Sbjct 585217 CATGGCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAA 585158 Query 76772 CTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTT 76831 | ||| || | ||| | ||| ||||||| || | ||| || || || || |||||| Sbjct 585157 CGGGCGGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTT 585098 Query 76832 CCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCC 76891 ||| ||||||| ||| ||||| || ||| || || || || || ||||| Sbjct 585097 CCACCAATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCG 585038 Query 76892 ATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCC 76951 ||| || ||| ||| |||| || || || || || || || ||||| || ||| Sbjct 585037 CTTTGTGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCC 584978 Query 76952 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAAT 77011 |||| | || | ||| ||| |||||||||| | | | || |||||||||| || Sbjct 584977 TGCATGGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAA 584918 Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071 || || | |||||| || ||||| ||| | || || || ||| |||| | | Sbjct 584917 GTTGGGGTTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTT 584858 Query 77072 TCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCT 77131 || ||||| || ||||| ||||| || |||||||| |||| ||| || || |||||| Sbjct 584857 TCAATATCTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCT 584798 Query 77132 ACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 77190 ||| | || | || |||||||| || || |||||||| | |||||||| |||||||| Sbjct 584797 ACAAT-TTGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATA 584739 Query 77191 GTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 | | || ||| || || || |||||||| Sbjct 584738 ATCGAATCCAAAATCCCTGTCATAAATAAT 584709 Score = 248 bits (274), Expect = 1e-60 Identities = 591/880 (67%), Gaps = 15/880 (2%) Strand=Plus/Minus Query 46337 TTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATAT 46396 ||||||| || ||||| ||||||||||| || ||||| |||||||||| || || || Sbjct 584135 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 584076 Query 46397 TTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTC-TGAA 46455 | |||||||||||||||||||| || ||| ||| ||||| || | || | ||| || | Sbjct 584075 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 584016 Query 46456 ATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATG 46515 || ||| |||||||| || || |||||| | ||||| || |||||| || || Sbjct 584015 GCCA-TCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 583957 Query 46516 AGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCC--GATA 46573 || ||||| | || || |||| ||| || | ||| || || || || |||| Sbjct 583956 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 583897 Query 46574 TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633 | || ||| || ||||| || || || | | |||| | | | || | Sbjct 583896 AT-TCCATGA-ACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 583839 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 |||| |||||||| | || |||||||| ||| || || ||| ||| || ||||| | Sbjct 583838 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 583779 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA-AAGAATATG 46752 |||| || || | ||||| | ||| || || | ||| | ||| | ||||| ||| Sbjct 583778 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAA-GCTCCCGCTGAAGAAAATG 583720 Query 46753 CCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCAC 46812 ||||| || || ||||| || || | | || | || | | | | | ||||| Sbjct 583719 CCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAG 583663 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 | ||||| || || ||||||||||||||||| | || |||| |||| || || Sbjct 583662 CGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGC 583603 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 || |||||| ||| |||||||| ||| ||||| || | || ||| |||| || Sbjct 583602 CTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAG 583543 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 || |||||||| || ||||| || || |||||||| | ||||| | || |||||| Sbjct 583542 TGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACT 583483 Query 46993 TCTGTACAAAATCGTTCA--GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050 || | || | ||||| | | || ||||| || || || ||||| |||||||||| Sbjct 583482 TC-GCTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAA 583425 Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGA 47110 | || | || ||| ||| |||| || | ||| | | || | ||||| || Sbjct 583424 AAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCT 583365 Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 || | || | || | ||||||||| |||||||| || || || ||||||| Sbjct 583364 GGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACA 583305 Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | | ||| || ||| | |||| || || |||| |||||| Sbjct 583304 TTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 583265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712842369080640