Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq98 141 2e-29 seq648 125 2e-24 seq2553 118 3e-22 seq401 113 1e-20 seq461 111 4e-20 seq172 100 8e-17 seq841 98.7 3e-16 seq1084 87.8 5e-13 seq35 84.2 6e-12 >seq98 Length=166217 Score = 141 bits (156), Expect = 2e-29 Identities = 409/615 (67%), Gaps = 12/615 (2%) Strand=Plus/Minus Query 19416 CGACATTGGCAAGATCGTTGCCGCTGGTGGTCAGTCAGGCATTGCCAC-CAAAGAACTGA 19474 ||| || | |||||||||||| || | ||| ||| | | | | || | | |||| ||| Sbjct 120570 CGATATCGCCAAGATCGTTGCTGCCGCTGGCCAGGC-GTCGATCCCGCGCGAAGAGCTGG 120512 Query 19475 CCGCGTTT-GCTGAATCCGCCATCAAAATGGGTGTGGCGTTCGATATCACGGCAGACGAG 19533 ||| || || || ||| || ||||| ||||| ||||| | || || || ||| Sbjct 120511 T-GCGCTTCGCCGAGGACGCGGCGAAGATGGGCGTGGCCTTCGACACCAGCGCTGAAGAG 120453 Query 19534 GCAGGGCAGGCAATGGCCGAAATGCGCGCCGCGTTCCGCATGACGCAGCCGCAAGTCAAC 19593 || || ||| | |||||| |||| |||| ||| ||| ||| | || | Sbjct 120452 GCGGGCCAGACCATGGCCACCTGGCGCACCGCCTTCAAGATGGGCCAGGACGACGTGGTC 120393 Query 19594 GCGCTGGCTGACAAAATCAACTACCTGGGCAACAACACTGCCG-CATCAGCCAAAGACAT 19652 | |||||| ||||| ||||||||||||||||||| | | ||| || | ||| | | || Sbjct 120392 GTGCTGGCCGACAAGATCAACTACCTGGGCAACACCGGTCCCGCCAGCGTCCAGA-AGAT 120334 Query 19653 TATGGAGATCGTGCAGCGCATCGGGCCGCTTGGTGAAGTGGCTGGCGCTGCGTCA--GGT 19710 | ||| | ||| | |||||||| |||| ||||| ||||||||| ||| | || || Sbjct 120333 CAGCGAGGTGGTGAACCGCATCGGCGCGCTCGGTGAGGTGGCTGGC-CTG-GGCAGTGGC 120276 Query 19711 TCGATTGCAGCTATGGGCGCGACACTGCGCGGCATGGGTATTGGCAACGAGATTGCCGCG 19770 || | || || ||||||| || || ||| ||||| || | ||| | | || Sbjct 120275 CCGCTGGCCGCGCTGGGCGCCACCGTGGCCGGTATGGGCATCGAGTCGGAGGTGTCTGCC 120216 Query 19771 ACCGGTATCAAGAACCTGTTGCTGAACCTGTCAGCCGGTAAGGCCGCCA-CAAAAGCACA 19829 ||||| ||||||||| || |||| | |||||| | || | || || | ||| ||| || Sbjct 120215 ACCGGCATCAAGAACATGCTGCTTACCCTGTCCTCGGGCGATGCGGCGACCAAGAGC-CA 120157 Query 19830 GGTGGCAGTGTTTAAACAGCTTGGCTACACATCCAGCCAGGTTGCCAAATCCATGCAGTT 19889 | | | | || || |||||||| || ||| | | ||||| |||||||| Sbjct 120156 GCTCACGGCTTTCAAGAAGCTTGGCCTCAACGCCAAGGACATGGCCAACGCCATGCAGAA 120097 Query 19890 GAACGCTGACGAAACGATCCGCGTCATCCTGACGAAGATTGCAAAACTGCCGAAGCACGC 19949 | |||| | || | ||| | | || || |||| | ||| ||||| ||| || Sbjct 120096 GGACGCCGGCGGGGCCATCGTGGGCGTCTTGGAGAAGCTGAAAAAGCTGCCCAAGGCCGA 120037 Query 19950 GCAGGCCGCAGCATTAACGCAACTGTTCGGCAAAGAGGTGGTTGGTTCAATCGCGCCGCT 20009 ||||||||| | | || || ||||| || ||| | || | ||||| ||||| Sbjct 120036 GCAGGCCGCGACGATGACCCAGCTGTTTGGGCGCGAGTCCATCGGCGCCATCGCCCCGCT 119977 Query 20010 GCTGACGAACCTGGA 20024 |||||| || ||||| Sbjct 119976 GCTGACCAATCTGGA 119962 >seq648 Length=65085 Score = 125 bits (138), Expect = 2e-24 Identities = 207/295 (70%), Gaps = 13/295 (4%) Strand=Plus/Minus Query 26908 GCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCA 26967 ||| | |||| | || ||||||||||||||| |||| | ||| | | || ||| Sbjct 40350 GCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTC---CCA 40294 Query 26968 TTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACC 27027 | |||||| |||| |||||| ||| | |||| |||||||||||||||||||| Sbjct 40293 CTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTATTCACC 40234 Query 27028 AGCGATTTCCGCCAGCTTGCCGAAGAT-GACAACGCGGTGCCATTCCGTCTGCT----CT 27082 ||||| || || | ||||||||| || |||| | ||||||||||| || | || || Sbjct 40233 GGCGATCTCTGCAACCTTGCCGAACATCGACA-CACGGTGCCATTCGGTTTTCTCGACCT 40175 Query 27083 TTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCA 27142 | || ||| || ||| || |||||| |||| | || || | || || |||| Sbjct 40174 TCTG----GCCGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTC 40119 Query 27143 ACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCCTAAATTACCGA 27197 || ||| ||| ||||| |||||| ||||| ||||| | ||| | |||||| Sbjct 40118 ACGGCGTTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGCCGCATGTACCGA 40064 >seq2553 Length=3545 Score = 118 bits (130), Expect = 3e-22 Identities = 182/258 (71%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 26925 TGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGAC 26984 ||||||| || ||||| || |||||||||| | ||| |||||||| || ||| ||| || Sbjct 2572 TGATTTCTGTCGTGTACCGTTCAACGCCTTCTTTATCTGTCCATTTGCGTGTTTGCAAAC 2513 Query 26985 CGCCTTCAATGAACACCTTGCTG--CCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAG 27042 |||||| || | ||| | || ||||| || || | |||||| ||||| |||| Sbjct 2512 GGCCTTCGATATAAACC--GATGAACCTTTTTTCAAATACTGACCAGCTATTTCTGCCAA 2455 Query 27043 CTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCTT 27102 ||||| ||| | ||| |||||||| || || || ||||| || || Sbjct 2454 CTTGCGATAGAACGTGATGCGATGCCATTCAGTGATTTCCTTCCTCTCGCCGCTGTTTTT 2395 Query 27103 ATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCAACTGCGCCACCTGACGGCAT 27162 ||||||||| |||||| || |||| ||||| ||||| ||||| | || |||||| Sbjct 2394 GTCTTTCCACGATTCGGTAGTCGCAACGCTGATGTTGGCCACTGCTTCGCCATTCGGCAT 2335 Query 27163 GTAGCGCACTTCTGGATC 27180 |||||| ||| ||||| Sbjct 2334 GTAGCGAGTTTCAGGATC 2317 >seq401 Length=77198 Score = 113 bits (124), Expect = 1e-20 Identities = 193/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 26906 CGGCCATTCAT---GCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCA 26962 |||||||||| | | ||| ||| || ||||||||||| | || || | | || Sbjct 66328 CGGCCATTCACCTGGTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTC- 66386 Query 26963 GTCCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTAT 27022 ||| | ||||| || ||| |||||| | | | || ||| ||||| ||||| || Sbjct 66387 --CCACTCGCGGGTGCGGAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATAC 66444 Query 27023 TCACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCT 27082 ||||| |||||||| || | ||||||||||| || ||||||||||| || || |||| Sbjct 66445 TCACCCGCGATTTCGGCGATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCC 66504 Query 27083 TTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATTGGCA 27142 | | | ||| || |||||||||||| ||||| | ||||| | | | | || | Sbjct 66505 TGCTGCTGGCCGGTCTGCTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTT 66564 Query 27143 ACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCG 27181 || ||| || ||| ||||||| ||||| || ||| Sbjct 66565 ACGGCGTTGCCGTTCGGGGTGTAGCGGACTTCCGGGTCG 66603 >seq461 Length=6970 Score = 111 bits (122), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 26970 TACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAG 27029 ||||||| || || || || ||| | |||| ||| |||||||| |||||||||| Sbjct 2329 TACGGGTACGGAGTTGCCCCTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCACCAG 2270 Query 27030 CGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTT 27089 | | |||||| ||||||||||| | || ||||||||||||||||||||||| | Sbjct 2269 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGCCATTCCGTCTGCTCCCGCATCT 2210 Query 27090 CGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTG-AGATTGGCAACTGCG 27148 | || || || || ||| |||| | |||||| | ||| || || || |||||| Sbjct 2209 CCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCCA-CCTGCAGGTTTGCCACTGCG 2151 Query 27149 CCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCC 27186 || || || ||||| || ||||| ||||| ||||| Sbjct 2150 CCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCC 2113 >seq172 Length=24343 Score = 100 bits (110), Expect = 8e-17 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 26922 CGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCA 26981 || |||| || |||| ||| ||| ||||| | ||| | || | || | |||| Sbjct 1288 CGATGATGTCGGTGGAGTACTTCTCCACGCCGTCCTGGCCGGTGTACTTGTCGTAACGCA 1347 Query 26982 GACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCA 27041 | | |||||| | | | ||| |||||| |||||||||||||| || |||||||| | | Sbjct 1348 GGCTGCCTTCGACGTAGACCGAGCTGCCCTTGCGCAGGTATTCGCCGGCGATTTCACCGA 1407 Query 27042 GCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTC 27081 |||||||||||| || |||||||||||||| || |||| Sbjct 1408 GCTTGCCGAAGAACACCACGCGGTGCCATTCGGTACGCTC 1447 >seq841 Length=45872 Score = 98.7 bits (108), Expect = 3e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 26970 TACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAG 27029 ||||||| || || ||||| ||| | |||| ||| |||||||| ||||| |||| Sbjct 39639 TACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAG 39698 Query 27030 CGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTT 27089 | | |||||| ||||||||||| | || ||||| |||||||| |||||||| | Sbjct 39699 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCT 39758 Query 27090 CGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTG-AGATTGGCAACTGCG 27148 | ||||| || || ||| |||| | ||||| | ||| || || || |||||| Sbjct 39759 CCCCTGTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGA-CCTGCAGGTTTGCCACTGCG 39817 Query 27149 CCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCC 27186 || || || ||||| || ||||| ||||| || || Sbjct 39818 CCCCCGTTGGGGATGTAACGGACTTCCGGATCTTTTCC 39855 >seq1084 Length=8902 Score = 87.8 bits (96), Expect = 5e-13 Identities = 190/282 (67%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 26901 GCATACGGCCATTCATGCCCACGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGAT 26960 |||| | ||| | |||| | ||| | ||||| |||||||| || | | || | | | Sbjct 8563 GCATTCTGCCCTGCATGTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTTTTT 8504 Query 26961 CAGTCCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGT 27020 | ||| | || ||| | || ||||| ||| | |||| ||||| ||||| | Sbjct 8503 C---CCACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGAT 8447 Query 27021 ATTCACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCT 27080 | |||||||||||||| || | || || || | ||| ||||||||||| |||| | Sbjct 8446 ACTCACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTT 8387 Query 27081 C--TTTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGATT 27138 | ||| || | | || ||| || |||||| || |||| |||| ||||||||| Sbjct 8386 CGACTTTCTGTCCCGTTTG--CTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATT 8329 Query 27139 GGCAACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATC 27180 || ||||| ||| ||| | |||||| ||||||||| Sbjct 8328 GGTTACTGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATC 8287 >seq35 Length=166930 Score = 84.2 bits (92), Expect = 6e-12 Identities = 180/263 (68%), Gaps = 11/263 (4%) Strand=Plus/Plus Query 26926 GATTTCAGTGGTGTAGCGCTCAACGCCT---TGCTGATCAGTCCATTTACGGGTTCGCAG 26982 |||||| ||| ||||||| || |||| | || || ||| || ||||| ||| Sbjct 115769 GATTTCGGTGCTGTAGCGATCGGCGCCGGTATCCTTGTCTTGCCACTTGCGGGTCTTCAG 115828 Query 26983 ACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAG 27042 || |||||| ||| | ||| || ||| || ||||||||| || |||||||| ||||| Sbjct 115829 ACGGCCTTCGATGTAGACCGAGCGGCCCTTCTTCAGGTATTCGCCGGCGATTTCGGCCAG 115888 Query 27043 CTTGCCGAAGATGACAACGCGGTGCCATTCCG--TCTGCTCTTTTGGTTCGCCTGTGGCC 27100 | | ||||| |||||||||||||| | ||| | | || ||||| ||||| Sbjct 115889 GCGGTTATACATGACGACGCGGTGCCATTCGGTTTCTTCGCGCTT--CTCGCCGCTGGCC 115946 Query 27101 TTATCTTTCCACTTTTCGGTTGTGGCAATGCTGAGAT-TGGCA-ACTGCGCCACCTGACG 27158 || || ||||| ||| ||||| ||| || || | ||| | |||| | || | Sbjct 115947 TTGTCCTTCCAGGACGAGGTGGTGGCGATG--GACATGTTGCAGATTGCGGCCCCGTCGG 116004 Query 27159 GCATGTAGCGCACTTCTGGATCG 27181 | ||||||| ||||| || ||| Sbjct 116005 GGCTGTAGCGGACTTCCGGGTCG 116027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133999565199120