Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq3870 95.1 1e-14 seq5011 86.0 7e-12 >seq3870 Length=345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 201/299 (67%), Gaps = 16/299 (5%) Strand=Plus/Plus Query 156284 GATGCTTTCCAATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACA 156343 ||||| ||||| ||| || |||||||| ||||| ||||| || |||||||| || || Sbjct 12 GATGCCTTCCAGTCGCTGGAGTACGAAGTAAACACCCTGCACACCGCCAACGGTCAGACG 71 Query 156344 CCTTTCGTTACTATTACTTTCGGTACTGGTAC-----GGGAATGTTTGAACGAATGATCC 156398 || || || || || ||| ||| || || |||||| || |||| | Sbjct 72 CCGTTTGTAACCTTTGGTTTTGGTCTGGGCACCAGCTGGGAATCG-----CGCCTGATTC 126 Query 156399 AGAAAGCGATTCTGAAAAACCGTATTCGTGGTCTGGGTAAACAAGGTATTACCCCTGTGT 156458 || || |||| ||| |||||||| || || |||||| | ||| || | |||| Sbjct 127 AGGAATCGATCCTGCGTAACCGTATCGCAGGCCTCGGTAAAAACCGTAAAACTGCGGTGT 186 Query 156459 TCCCTAAACTGGTCATGTTT---ATGGAAAAAGGTGTAAACATGAATCCTGGGGATCGTA 156515 |||| |||||||| |||| || | ||| | ||| || || |||| | Sbjct 187 TCCCGAAACTGGT---GTTTGCGATTCGCGATGGTCTGAACCATAAAAAAGGCGATCCGA 243 Query 156516 ACTATGACATCAAACAATTGGCTCTGGAATGCGCTTCGAAACGTATGTACCCAGATATC 156574 |||| ||||||||||| |||| ||||| ||||| || || ||||| || |||||| Sbjct 244 ACTACGACATCAAACAGCTGGCGCTGGAGTGCGCAAGCAAGCGCATGTATCCGGATATC 302 >seq5011 Length=2423 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 42305 TCGCGGGATC--ATCGTTTCCGCATGGAACCCTGTTGATC-TGGATAAAATGGCATTGCG 42361 |||||| || ||||||||||||||||| || | | || | ||| ||||||| ||| Sbjct 638 TCGCGGCGTCTGATCGTTTCCGCATGGAATCCGGC-GCTCGTCGATGAAATGGCGCTGCC 580 Query 42362 TCCGTGTCACTGTTTCTTCCAGTTCGTCGTAATCAACGGTAAACTGTCTCTACAGTGGTA 42421 || || ||||| | ||||||||| ||| | |||| || || || ||| || Sbjct 579 GCCCTGCCACTGCCTGTTCCAGTTCTACGTGGCCGACGGAAAGCTTTCCTGCCAGCTCTA 520 Query 42422 TCAGCGTTCGGTTGATGTCTTCTTAGGGTTGCCGTTCAATATCGCCTCCTACGCTCTCCT 42481 ||||| || | ||| |||| | || |||||||||||||||| ||||| || || || Sbjct 519 CCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCT 460 Query 42482 GAC 42484 ||| Sbjct 459 GAC 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576498371658680