Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq1432 385 3e-102 seq250 282 2e-71 seq5011 131 1e-25 seq878 102 5e-17 seq154 102 5e-17 seq1272 86.0 4e-12 >seq1432 Length=12607 Score = 385 bits (426), Expect = 3e-102 Identities = 576/805 (72%), Gaps = 21/805 (3%) Strand=Plus/Plus Query 781 GACACCCTACGAAGACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCG 840 ||| || || ||||||||| | |||||| |||||||||| |||| | ||| ||||| Sbjct 8356 GACTCCTTATGAAGACCTGCTCCGCGACGTCCTGGAGACCGGCACGCATAAGTCCGATCG 8415 Query 841 CACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGG 900 |||||| || || ||| |||| ||||| ||| | || | ||| || | |||| Sbjct 8416 CACCGGGACGGGGACGACGAGCGTCTTCGGGCGTCAGATCCGCTTCGATCTGTCGAAGGG 8475 Query 901 CTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTG 960 |||||| || ||||||| |||||||| ||||||||||| | |||||||| || || || Sbjct 8476 CTTCCCCCTCATCACCACCAAGCGCGTGCACTTCAAATCCATCGCGTACGAGCTCCTCTG 8535 Query 961 GTTCCT-CAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTCACCATCTGGG 1019 |||||| ||| || || | ||||| | |||| ||| ||||| ||||| ||||||| Sbjct 8536 GTTCCTGCAG-GGTGATTCCAACGTCGGGTGGCTCCGCGAGAACGGGGTCACGATCTGGG 8594 Query 1020 ACGAGTGGGCCGACG---CCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGC 1076 ||||||||||||| | |||||| ||||||| || |||||||| | ||||||||| Sbjct 8595 ACGAGTGGGCCGATGAATCCGGCG---ACCTCGGCCCGGTCTACGGGGTGCAGTGGCGTT 8651 Query 1077 ACTGGCATGTCGAGGACGGAGGATCGTCGTGGATTGACCAGATCTCGGCCGCCGTGGAGC 1136 |||| ||| | |||| | | | | || |||||| |||| | || | |||| Sbjct 8652 CGTGGC----CGACGCCGGACG--GGGGGAGCATCGACCAGCTCTCCGACGTGATCGAGC 8705 Query 1137 TGCTTCG-CGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGAC 1195 | | || || ||| ||||| || ||| | | || || || |||||| | ||| Sbjct 8706 AGATCCGACGCTCGCCC-GACTCCCGTCGGCTCATCGTGTCTGCCTGGAACCCGGCCGAC 8764 Query 1196 CTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGC 1255 || |||||||| || || || ||| |||||||| | ||||||| ||||||| Sbjct 8765 ATCCCGGACATGGCGCTCGCGCCCTGTCACGCGCTGTTCCAGTTCTACGTCGCCGACGGC 8824 Query 1256 CGGCTCTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAAT 1315 ||||||| ||| | || ||||||||||| |||||||||||||||||||||||||| Sbjct 8825 AAGCTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAAC 8884 Query 1316 ATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGT 1375 |||||||| ||||| | || | ||| |||| ||||||| ||||| | || Sbjct 8885 ATCGCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGA 8944 Query 1376 GAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGCGCTG 1435 || | ||||||| ||||| ||||||||| ||||| |||| |||||||| |||| || | Sbjct 8945 GACTTCGTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGGTGCGG 9004 Query 1436 ATGCAGCTCCGCCGACGACCGCGGCCCTACCCGAGGCT-CGTGCTACAC-CACGCGCCG- 1492 ||||||| |||| || |||||||||| ||| ||| | | | || ||| Sbjct 9005 GAGCAGCTCAGCCGTGAGCCCTACCCCTACCCGACGCTGCGTTTCGCGCGGAAGC-CCGA 9063 Query 1493 -TCGATCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCCGTC 1551 ||||| |||||||||| || ||| || ||| | | | | |||| | | ||| || | Sbjct 9064 ATCGATTCTCGACTACCGCTATGAGGACTTCCTCGTGGAGGACTATCAGCACCACGCGCC 9123 Query 1552 GATCAAGGCGCCGGTGGCCGTCTGA 1576 ||||| |||| ||||||| || ||| Sbjct 9124 GATCAGGGCGGCGGTGGCGGTATGA 9148 >seq250 Length=59172 Score = 282 bits (312), Expect = 2e-71 Identities = 562/811 (69%), Gaps = 35/811 (4%) Strand=Plus/Minus Query 785 CCCTACGAAGACCTGTTGCGCGACATCCTGGAGACTGGCAAGTCGAAGGATGATCGCACC 844 |||||| |||||| ||| || | ||||||| |||| ||| || |||||| Sbjct 46954 CCCTACCTGGACCTGCTGCAGCACGTGCTGGAGAACGGCACCGAAAAGTCCGACCGCACC 46895 Query 845 GGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGACCTCACCGAGGGCTTC 904 ||||||||||||| ||| ||||||| ||| |||| | | |||| ||| |||||| Sbjct 46894 GGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCAACCTGGGCGACGGCTTC 46835 Query 905 CCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTACGAACTTCTGTGGTTC 964 |||||||||||||| ||| | ||| | ||| | | || || ||||||||| Sbjct 46834 CCGCTGGTCACCACCAAGAAGCTGCACCTGCGGTCGATCATCCATGAGCTGCTGTGGTTC 46775 Query 965 CTCAGTGGCGACACGAACGTGAAGGCG--CTCAACGACAACGGCGTCACCATCTGGGACG 1022 || | |||||||| ||| | ||| |||| ||||||| || ||||||||||| Sbjct 46774 CTGAAGGGCGACACCAACATC--GGCTACCTCACCGACAACCAGGTGCGCATCTGGGACG 46717 Query 1023 AGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAGTGGCGGCACTGG- 1081 |||||||||| ||| ||| |||| ||||| |||||||| ||| ||||| |||| Sbjct 46716 AGTGGGCCGATGCCAACGGCGACCTGGGTCCGATCTACGGCAAGCAATGGCGCAGCTGGG 46657 Query 1082 -CAT-GTCGAGGACGG-AGGATCGTCGTGGATTGACCAGATCTCGGCCGCCG-TGGAGCT 1137 || | ||| | ||| || |||| ||||||| | | || | ||||| Sbjct 46656 CCACCGCCGATGGCGGCAGCATCG----------ACCAGATG-CAGTGGCTGGTGGAGGA 46608 Query 1138 GCTTC-GCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATGGAACGTCGGTGACC 1196 | | ||| |||| || ||||| ||| ||||| ||| |||||||| || || | Sbjct 46607 GATCAAGCGCA-ACCCCGATTCGCGGCGGCTGGTGGTCAGCGCCTGGAACGTGGGCGAGC 46549 Query 1197 TCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTGTACGTCGTCGACGGCC 1256 | | ||||| | || ||||||| | |||||||| | ||||| || |||||| Sbjct 46548 TGTCGCAGATGGCGTTGATGCCCTGCCACAACCTGTTCCAGTTCTACGTGGTGGACGGCA 46489 Query 1257 GGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAAT 1315 |||| ||||| || | ||||||||||||| ||||| ||||| || ||||||||||| Sbjct 46488 AGCTCA-GCTGCCAGTTGTACCAGCGCAGCGGCGACATCTTCCTGGGCGTGCCGTTCAAC 46430 Query 1316 ATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGT 1375 |||||| ||||| || ||| | |||||| | |||||| |||| ||| | ||||| Sbjct 46429 ATCGCCAGCTACGCACTGCTCACCCACATGGTGGCGCAGGCCACCGGGCTGGGCGTGGGC 46370 Query 1376 GAGCTGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGCGCTG 1435 || | | ||| |||||| || | ||| ||||||||| |||||||||| Sbjct 46369 GACTTCGTGCATACCCTGGGCGACGCGCATCTGTACTCCAACCACGTTGACCAGGCGCGC 46310 Query 1436 ATGCAGCT-CCGCCGACGACCGCG-GCCCTACCCGAGGCTCGTGCTACACCACGCGCCGT 1493 |||||| ||| ||| ||||| || || ||| ||| ||| | | | || || || Sbjct 46309 GAGCAGCTGTCGCGCACG-CCGCGCGCGCT-GCCGCAGCT-GTGGTTGAACCCG-GCGGT 46254 Query 1494 ---CGA--TCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCC 1548 ||| | |||| || || || ||| |||||| | ||| ||||||||||||||| Sbjct 46253 CACCGACCTGTTCGGCTTCCAGTTCGATGACATCCGCATCGACGGCTACGACCCGCACCC 46194 Query 1549 GTCGATCAAGGCGCCGGTGGCCGTCTGATGG 1579 | ||||||||||||||||||| || ||| || Sbjct 46193 GGCGATCAAGGCGCCGGTGGCGGTATGACGG 46163 >seq5011 Length=2423 Score = 131 bits (144), Expect = 1e-25 Identities = 342/505 (68%), Gaps = 30/505 (6%) Strand=Plus/Minus Query 948 ACGAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCG 1007 |||| || ||||||||||| | ||||| |||||| | ||||| || ||||||| Sbjct 841 ACGAGCTGCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCG 782 Query 1008 TCACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGC 1067 | || |||||||| || |||||||||| ||| | ||||| || ||||| ||| | Sbjct 781 TGACGATCTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATC 722 Query 1068 AGTGGCGGCACTGGCATGT---CGA-GGACGGAGGATCG-TCGTGGATTGACCAGATCTC 1122 ||||||| ||||| || ||| || ||| |||| || ||||| | ||||| Sbjct 721 AGTGGCGCTCCTGGCCTGCGCCCGACGGCCGGCATATCGATCA--GATTG--CGAATCTC 666 Query 1123 GGCCGCCGTGGAGCTGCTTCGCGAGGACCCTGACTCGCGCCGGAACGTGGTATCCGCATG 1182 | | | || || | |||| | ||||| || | || |||||||| Sbjct 665 GTCAGT------GCGATAAAGCAAAATCCCT-ATTCGCGGCGTCTGATCGTTTCCGCATG 613 Query 1183 GAA--CGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCATGTTCCAGCTG 1240 ||| || || | | || || ||||| || | || |||||| | |||||||| | Sbjct 612 GAATCCGGCGCT--CGTCGATGAAATGGCGCTGCCGCCCTGCCACTGCCTGTTCCAGTTC 555 Query 1241 TACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGGACATGTTCCT 1299 ||||| | |||||| ||| || |||| || ||||||||||| ||| || || || || Sbjct 554 TACGTGGCCGACGGAAAGCTTTC-CTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCT 496 Query 1300 CGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGC 1359 ||| ||||||||||||||||| || || || || || | | |||| | |||||| | Sbjct 495 CGGCGTGCCGTTCAATATCGCATCCTATGCCCTGCTGACCCTCATGGTGGCGCAGGTCAC 436 Query 1360 CGGCCTGCGGGTGGGTGAGCT-GATCTGGACCGGC--GGCGACTGC-CACATCTACAACA 1415 || |||| | |||||| | | || || || ||||| ||| || |||| || Sbjct 435 GGGTCTGCAGCCGGGTGATTTCGTTC---ACACGCTGGGCGA-TGCGCATCTCTATGCCA 380 Query 1416 ACCACGTCGACCAGGCGCTGATGCA 1440 |||| |||| ||||||| | |||| Sbjct 379 ACCATTTCGAGCAGGCGCGGCTGCA 355 >seq878 Length=51136 Score = 102 bits (112), Expect = 5e-17 Identities = 186/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 830 AAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGAC 889 |||| || ||||||||||||||||| | | ||| | | ||| | ||| | | Sbjct 39599 AAGGGCGACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGC 39540 Query 890 CTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTAC 949 | |||| |||||||||||| | ||||| ||| | ||||||||| | || | Sbjct 39539 TTGGCCGACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAAT 39480 Query 950 GAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTC 1009 ||| | | ||| | | |||||| |||| ||| | ||| ||| ||||| || ||||| Sbjct 39479 GAATTGATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTG 39420 Query 1010 ACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAG 1069 ||||||||||| |||||| || | ||| |||| || || || ||||||| |||| Sbjct 39419 CGTATCTGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAG 39360 Query 1070 TGG-CGGCACTGGCATGTCGAGGACGGAGG 1098 ||| | || ||||| | ||||||| || Sbjct 39359 TGGACCGC-CTGGCCCACCAAGGACGGCGG 39331 >seq154 Length=55709 Score = 102 bits (112), Expect = 5e-17 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 3461 GCTCGACCCGCACGTGGGTGTGATCTACGGCGATTCGATCACCCTGAATC-GGGCGGCGT 3519 ||| ||| ||||||| || |||||||||||||||| |||||| || | |||| | | Sbjct 9343 GCTGGACTCGCACGTCGGCCTGATCTACGGCGATTCCATCACCTTGGCCCGGGGCCGGGA 9284 Query 3520 CGATCACCGGT-CGGCTCGCTGAGATGGGTTACGCGTCCACGAACGTCGTTTTCGGCGTC 3578 | || | ||| ||||| | | | ||||| || ||| ||||| || | ||| | Sbjct 9283 C-AT-TCTGGTGCGGCTGGAGAAAAAGGGTTTTGCATCCGGCAACGTTGTCCTGGGCATA 9226 Query 3579 GGCTCGTACACGTACCAGTACAACACCCGGGACACGTTCGGCAGCGCCATGAAGGCCACG 3638 |||||||| || |||||||| || || ||||| || ||| | || ||||||| ||| Sbjct 9225 GGCTCGTATACCTACCAGTATCTGACGCGCGACACCTTTGGCTGGGCGTTGAAGGCGACG 9166 Query 3639 TGGGCCGAGGTGGACGGTGAGGGCGTGAACCTGCTCAAGGACCC 3682 | ||||| || |||| |||| | | | ||| |||||||||| Sbjct 9165 TACGCCGAAGTCAACGGCGAGGCCCAGGAACTGGTCAAGGACCC 9122 >seq1272 Length=12228 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/159 (72%), Gaps = 12/159 (8%) Strand=Plus/Plus Query 41814 TTCAGCGGCGAGAAGATCGTGCG------CGCCGCGATCTCCTGCACCACGCCTGTCGTC 41867 ||||||| ||||||| | ||||| ||||||| ||||| || || || || Sbjct 9720 TTCAGCGACGAGAAGCTGGTGCGAGCGGTCGCCGCGGTCTCC------ACCCCGGTGGTG 9773 Query 41868 TCGGCCATCGGCCACGAGCCTGACAATCCCGTCCTGGACGACGTCGCCGACTTCCGAGCC 41927 || ||||| |||||| ||| | || | || |||||||| ||||| | || ||| Sbjct 9774 AGTGCGATCGGGCACGAGAACGACCACCCGCTGCTCGACGACGTGGCCGATCTGCGCGCC 9833 Query 41928 GCAACACCGACCGACGCCGCGAAGAACGTCGTGCCCGAC 41966 | || ||||||||||||||||| ||||||||||||| Sbjct 9834 TCGACCCCGACCGACGCCGCGAAACGCGTCGTGCCCGAC 9872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296093928834627