Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq2798 96.9 1e-15 seq447 93.3 1e-14 >seq2798 Length=1848 Score = 96.9 bits (106), Expect = 1e-15 Identities = 283/431 (66%), Gaps = 14/431 (3%) Strand=Plus/Minus Query 10019 AAACTGAGCGTGACCTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGGCTGGGTGGCC 10078 |||||| | || || || ||||||||||| || ||||| |||||||| | ||||| || Sbjct 1218 AAACTGCGTGTTACGTTCGCCCTGGACTGTTGCGATCGTGAAGCCATAGACTGGGCCGCA 1159 Query 10079 AGCCCGACCGGCTAC-----AGCGGCGATGACATACGCGACTTGATGCTGGAAAGCG-TG 10132 ||| || || ||| |||| | || | || | ||| | | | ||| | Sbjct 1158 AGCACGGGAGGTTACGATAAAGCGACAGTG-----CAGGATGTCATGTTAGGA-GCGATA 1105 Query 10133 GAGAAGCGTTTTGGCGACCTACTGCCG-ACCACACCGGTGCAATGGCTAAGCGATAACGG 10191 || || || |||||||| | | ||| | || || | || ||||| | |||||||| Sbjct 1104 GAAAAACGCTTTGGCGATAAAGTACCGGAACAGTCCA-TCCAGTGGCTGACAGATAACGG 1046 Query 10192 TTCGGCCTACATCGCTGAACAGACGCGCCTGTTTGCTCGACAGATTGGCCTACAGCCAGT 10251 ||| || || | || | | || || | ||| || || || | || |||| Sbjct 1045 TTCAGCGTATAGAGCGCATGAAACACGGCAGTTCGCCAGAGAGTTGAATCTGGAGCCCTG 986 Query 10252 GACCACGCCGGTACGCAGCCCGCAGAGCAACGGCATGGCAGAGAGCTTCGTTAAGACAAT 10311 || ||| | | |||| || ||||| || || |||||||| || ||||| || || || Sbjct 985 CACAACGGCAATCAGCAGTCCTCAGAGTAATGGAATGGCAGAAAGGTTCGTGAAAACGAT 926 Query 10312 CAAGCGCGACTACGTGGCGCACATGCCCAAGCCGGATCGAGAGACAGCCTTGCGCAACCT 10371 ||| |||||| | ||| |||||| || ||| || | || || |||| || || Sbjct 925 GAAGGAAGACTACATCGCGTTCATGCCGAAACCGAATGTAAGAACGGCATTGCATAATCT 866 Query 10372 GACGATTGCCTTCGAGCATTACAACGAGCAGCATCCGCACAGCGCCTTGAAATACCGCTC 10431 | | || |||| |||||||| || | ||||||||||| || || || ||||| Sbjct 865 TGCAGTGGCGATCGAACATTACAATGAAAACCATCCGCACAGTGCGCTGGGTTATCGCTC 806 Query 10432 GCCGAGGGAAT 10442 ||| | |||| Sbjct 805 TCCGCGAGAAT 795 >seq447 Length=48793 Score = 93.3 bits (102), Expect = 1e-14 Identities = 185/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 39243 CGAGCGCCGCGAGGTCAAGGTTCGGAAAGAGAAGTTGAAGAGTCGTGCAGACCACTTGAG 39302 ||||||| |||| ||||||| || || |||||| |||||| | || || ||| | | Sbjct 8507 CGAGCGCGCCGAGATCAAGGTCCGCAAGGAGAAGCTGAAGAACAGGGCGGATCACCTCAA 8566 Query 39303 GGAGGCTCAGGCCGCATTCAACGAGTTCATCCGCTGGCGCGACTGGGACCGCCCCTGCAT 39362 ||| | ||| ||||| || | | | ||| || || || | || ||| | Sbjct 8567 GGACACACAGCAGGCATTTAATGCCTGGGTTCGCGCCCGTGATGCGGCACTGCCATGCGT 8626 Query 39363 CAGTTGTGGGCGCTTTCATGATGGGCAGTATCACGCCGGGCATTACCGTTCCGTCGGCTC 39422 ||| || || ||| ||||| || || || |||||||| || ||||| | || || | Sbjct 8627 CAGCTGCGGCCGCCATCATGGGGGTCAATACCACGCCGGCCACTACCGCACTGTAGGAGC 8686 Query 39423 CCATCCCGAGTTGAGGTTCGACGAGGACAACGTCCACAAGCAATGCGCCCCATGCAACAA 39482 | || ||| ||||||| || | |||| | ||||| |||||||| |||||||| Sbjct 8687 GAACCCAGAGCTGAGGTTTGAGCCGCTGAACGCCTGGAAGCAGTGCGCCCCGTGCAACAA 8746 Query 39483 CCACAAGTCGGGAGACGTCGTGAACTACCGGATC 39516 |||| || ||| || || | || ||||| ||| Sbjct 8747 CCACCTTTCAGGAAACCTCATCAATTACCGAATC 8780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138347831892186