Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031103.1 Length=165772 Score E Sequences producing significant alignments: (Bits) Value seq3870 86.0 7e-12 seq56 86.0 7e-12 >seq3870 Length=345 Score = 86.0 bits (94), Expect = 7e-12 Identities = 199/296 (67%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 41852 ATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGTTTAATATCATAGTTC 41911 ||||| |||||||| | |||||||| ||||| || || |||||||| || || |||||| Sbjct 301 ATATCCGGATACATGCGCTTGCTTGCGCACTCCAGCGCCAGCTGTTTGATGTCGTAGTTC 242 Query 41912 GGATCGTCTTTATAAAGATTAACACCTTCTTCAA-CGAACATAACAAGCTTAGGGAAAAT 41970 |||||| |||| | | | || | ||| || || || | | || || || ||||| | Sbjct 241 GGATCGCCTTTTTTATGGTTCAGACCATCGCGAATCGCA-AACACCAGTTTCGGGAACAC 183 Query 41971 AGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 42030 | |||| | | | |||||| ||| ||||| || ||| || | || |||||| Sbjct 182 CGCAGTTTTACGGTTTTTACCGAGGCCTGCGATACGGTTACGCAGGATCGATTCCTGAAT 123 Query 42031 CATTCG---TTCAGTCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTG 42087 || || ||| |||| || || |||||| || |||||||| || || || Sbjct 122 CAGGCGCGATTC---CCAGCTGGTGCCCAGACCAAAACCAAAGGTTACAAACGGCGTCTG 66 Query 42088 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGT 42143 ||||| | | || || |||||||| || || | ||||| ||||||| Sbjct 65 ACCGTTGGCGGTGTGCAGGGTGTTTACTTCGTACTCCAGCGACTGGAAGGCATCGT 10 >seq56 Length=468132 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 70144 TTGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACC 70203 ||||||| | | | ||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 224495 TTGGTGCCGGTGAAAGGAATCGAACCCTCGACCTTCTCATTACAAGTGAGCTGCTCTACC 224436 Query 70204 TACTGAGCTA 70213 ||||||||| Sbjct 224435 AACTGAGCTA 224426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530273939425440