Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq250 201 2e-46 seq329 138 2e-27 seq5011 113 7e-20 seq1432 95.1 2e-14 seq878 87.8 3e-12 >seq250 Length=59172 Score = 201 bits (222), Expect = 2e-46 Identities = 227/304 (75%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGA 201849 |||||| | || |||||| | |||| | || | || ||||| | ||| |||| Sbjct 46961 CATGAAGCCCTACCTGGACCTGCTGCAGCACGTGCTGGAGAACGGCACCGAAAAGTCCGA 46902 Query 201850 CCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGA 201909 ||| ||||| || ||||| | | || ||||| | ||||||||||| ||| | || Sbjct 46901 CCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCAACCTGGGCGA 46842 Query 201910 AGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCT 201969 || || ||||||||||||||||| ||| | ||||| || || ||||||||||||||||| Sbjct 46841 CGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGGTCGATCATCCATGAGCTGCT 46782 Query 201970 GTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 ||||||||| | ||| |||||||||||| || | | |||||| | || |||||| Sbjct 46781 GTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTCACCGACAACCAGGTGCGCATCTG 46722 Query 202030 GGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAG 202089 |||||| ||||| ||| ||||| ||| | || ||| | ||||| ||||||||||| || Sbjct 46721 GGACGAGTGGGCCGATGCCAACGGCGACCTGGGTCCGATCTACGGCAAGCAATGGCGCAG 46662 Query 202090 CTGG 202093 |||| Sbjct 46661 CTGG 46658 >seq329 Length=161735 Score = 138 bits (152), Expect = 2e-27 Identities = 180/248 (73%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 201841 AAAAGC-CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTA 201899 |||||| |||| | || || || |||||| || | |||| || | |||||| | || | Sbjct 13139 AAAAGCACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCA 13198 Query 201900 ACTTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCC 201959 || | || ||||| ||||| ||||||||||||||||| |||| | || || |||| Sbjct 13199 ACCTCCAGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCC 13258 Query 201960 ATGAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACG 202019 | || ||| | ||||| | | || |||||||| || || |||||| ||||| | Sbjct 13259 ACGAACTGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATG 13318 Query 202020 TCACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGC 202079 | | |||||||| || ||||| ||| ||||||||||| | ||||| || || || | Sbjct 13319 TAAAGATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCAC 13378 Query 202080 AATGGCGT 202087 |||||||| Sbjct 13379 AATGGCGT 13386 >seq5011 Length=2423 Score = 113 bits (124), Expect = 7e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACA 201906 |||||||||||| || ||||| | || |||||||| ||||||||| || | | Sbjct 954 CGACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTC 895 Query 201907 AGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCT 201966 | |||||||| | || ||||| || | || || || |||||||| ||||| Sbjct 894 GGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 835 Query 201967 GCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCAT 202026 |||||||||||| | || || || |||||| ||| | || || ||| ||| || || Sbjct 834 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 775 Query 202027 CTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCG 202086 |||||| |||||||| || | ||||| || | || ||||| || || | || ||||| Sbjct 774 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 715 >seq1432 Length=12607 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAGTGCGGACATGTTCCTTGGCGTACCGTTTAACATC 202549 || || |||||||| |||||||| || || ||||||||||| || || ||||| |||||| Sbjct 8828 CTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATC 8887 Query 202550 GCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAGGCGAACATGGCGGTAGGCGAC 202609 || || |||||||||||| ||| | || || |||| | | | | | || ||| Sbjct 8888 GCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGAGAC 8947 Query 202610 TTCGTCTGGACAGGTGGTGA 202629 ||||||||||| || || || Sbjct 8948 TTCGTCTGGACGGGCGGAGA 8967 >seq878 Length=51136 Score = 87.8 bits (96), Expect = 3e-12 Identities = 202/299 (68%), Gaps = 8/299 (3%) Strand=Plus/Minus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGC-CG 201848 |||||| |||||||| || ||||| ||||| || || | || || ||| || Sbjct 39651 CATGAAGCAATATCTCGAACTACTGAACGATGT-CGTGACCAATGGCCTGACCAAGGGCG 39593 Query 201849 ACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAG 201908 |||| ||||| || |||||| | || || | || ||| | || || ||| | Sbjct 39592 ACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGCTTGGCCG 39533 Query 201909 AAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCC---ATGAGC 201965 | || || |||||| | |||||||| ||| ||||| ||| || |||| |||| Sbjct 39532 ACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCAC-TTCAA--AAGCATCGCCAATGAAT 39476 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCA 202025 || | ||| | | | || ||||||||||| ||| |||| || || ||| | Sbjct 39475 TGATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTA 39416 Query 202026 TCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGG 202084 |||||||||||||||| || |||| ||| | |||||||||||||| |||| ||| Sbjct 39415 TCTGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 39357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787901478636920