Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq250 113 7e-20 seq1432 102 1e-16 seq5011 93.3 7e-14 >seq250 Length=59172 Score = 113 bits (124), Expect = 7e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 |||||||||||||| || ||||||||||| |||| || ||||||||| || || Sbjct 46864 CAGATGCGCTTCAACCTGGGCGACGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTG 46805 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 || || ||||| || |||||| |||||||||| || || |||||||| ||| || || Sbjct 46804 CGGTCGATCATCCATGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTC 46745 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGC 200291 | ||| ||| | || ||| |||||||| ||||| Sbjct 46744 ACCGACAACCAGGTGCGCATCTGGGACGAGTGGGC 46710 >seq1432 Length=12607 Score = 102 bits (112), Expect = 1e-16 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 200834 GCGAGCTTTCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCA 200893 || |||| || ||||||||||||||||| ||||| || ||||| | || |||||||||| Sbjct 8823 GCAAGCTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCA 8882 Query 200894 ACATTGCATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCG 200953 |||| || || ||||| | |||| ||| | ||||| ||||| | || Sbjct 8883 ACATCGCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCG 8942 Query 200954 GTGATTTCGTATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTTC 201013 | || ||||| |||||||| || ||| ||| ||||| |||||||| || ||||| | Sbjct 8943 GAGACTTCGTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGGTGC 9002 Query 201014 G 201014 | Sbjct 9003 G 9003 >seq5011 Length=2423 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 200098 GACCGTACCGGTANNNNNACCACGT-CTATTTTCGGTGCACAGATGCGCTTCAATCTACA 200156 ||||||||||| | || |||| | ||||||| |||||||| ||| |||| Sbjct 953 GACCGTACCGGGACAGGCAC-ACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTC 895 Query 200157 AGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCT 200216 | || || || ||||||||||||| |||||| |||||||| |||||||| Sbjct 894 GGCGGGTTTTCCTGCCCTGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 835 Query 200217 GTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCAT 200276 | |||||||||| || || || || || ||| ||||| || || ||| || || || Sbjct 834 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 775 Query 200277 TTGGGACGAATGGGC 200291 ||||| |||||||| Sbjct 774 CTGGGATGAATGGGC 760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783258878016000