Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq250 196 7e-45 seq329 161 2e-34 seq5011 141 1e-28 seq5202 100 4e-16 seq1432 95.1 2e-14 seq878 95.1 2e-14 >seq250 Length=59172 Score = 196 bits (216), Expect = 7e-45 Identities = 223/297 (75%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAG-CTGA 196072 ||||| | || |||| || |||| |||| || | ||| | ||| |||| | || Sbjct 46960 ATGAAGCCCTACCTGGACCTGCTGCAGCACGTGCTGGA-GAACGGCACCGAAAAGTCCGA 46902 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 ||| |||||||| ||||| | | ||||| | |||||||| || ||||| || | Sbjct 46901 CCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCAACCTGGGCGA 46842 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 || |||||||||||||||||||| ||| |||||||||| || |||||||| || ||| | Sbjct 46841 CGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGGTCGATCATCCATGAGCTGCT 46782 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 |||||||||||| ||||||||||||||| || || | |||||| | || | ||||| Sbjct 46781 GTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTCACCGACAACCAGGTGCGCATCTG 46722 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||| |||||||| |||| | ||||| || || || ||||||| ||||| ||||| Sbjct 46721 GGACGAGTGGGCCGATGCCAACGGCGACCTGGGTCCGATCTACGGCAAGCAATGGCG 46665 >seq329 Length=161735 Score = 161 bits (178), Expect = 2e-34 Identities = 222/308 (72%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 196010 GCTGATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGC 196069 || ||||||||| || || || || ||||| |||| || || | || || ||||| Sbjct 13086 GCAGATGAAACAATACTTAGATTTAATGCAGCTCGTGCTGGACCAGGGA-ACACAAAAGC 13144 Query 196070 T-GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGC 196128 ||| | || || || ||||||||| |||||| || |||||||| | || |||| | Sbjct 13145 ACGACAGGACGGGAACAGGCACCATCAGTATTTTTGGCCATCAGATGAGGTTCAACCTCC 13204 Query 196129 GCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAAC 196188 |||| || || ||||||||||||||||| | || | ||| || |||||||||| Sbjct 13205 AGGAAGGCTTTCCCCTGGTCACCACCAAAAAACTTCATTTAAAATCCATTATCCACGAAC 13264 Query 196189 TGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTA 196248 || | ||||| | | || |||||||| || || ||||||| ||||| || | | Sbjct 13265 TGATCTGGTTTTTAAGTGGGGACACCAATATTGGCTACCTGAAAGCAAACAATGTAAAGA 13324 Query 196249 TCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGC 196308 |||||||||||||||| |||||| | || || || ||||| || || || || |||| Sbjct 13325 TCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGGC 13384 Query 196309 GTGCATGG 196316 || ||||| Sbjct 13385 GTTCATGG 13392 >seq5011 Length=2423 Score = 141 bits (156), Expect = 1e-28 Identities = 177/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTG-CG 196129 ||||||||||| || ||||| || ||||||| || |||||||| || || ||| || Sbjct 953 GACCGTACCGGGACAGGCACACGTTCCGTTTTCGGCTACCAGATGCGATTCGATCTGTCG 894 Query 196130 CAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 | |||| || | || ||||| || |||| || ||| ||||||||||| || Sbjct 893 GCGGGTTTTCCTGCCC-TGACGACCAAGAAACTGCATCTCAAATCCATCATCCACGAGCT 835 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 196249 | ||||||||||||| ||||| || |||||| ||||| || || ||| ||| | || Sbjct 834 GCTGTGGTTCCTGAAAGGCGAAACGAACATCGCCTATCTCAAGGAAAACGGCGTGACGAT 775 Query 196250 CTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||||||| ||||| || || | |||||||| || || ||||| || | |||||||| Sbjct 774 CTGGGATGAATGGGCCGACGAGAACGGCGATCTCGGGCCGGTCTATGGCTATCAGTGGCG 715 Score = 93.3 bits (102), Expect = 7e-14 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || ||||| ||||| ||||||||| || || |||| ||||| || |||||||| ||| Sbjct 536 CTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGTTCAATATC 477 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAA---TATGGTGGCGGGT 196865 || || || || ||| || | ||||||||| |||||||| | || | ||||| Sbjct 476 GCATCCTATGCCCTGCTGACCCTCATGGTGGC---GCAGGTCACGGGTCTGCAGCCGGGT 420 Query 196866 GATTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGC 196921 |||||||| ||| |||||| | ||||| || | |||||| | || ||||| Sbjct 419 GATTTCGTTCACACGCTGGGCGATGCGCATCTCTATGCCAACCATTTCGAGCAGGC 364 >seq5202 Length=749 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 178 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 237 Query 5547 TGCCAGAGTCGCCACATTTT 5566 | ||||| |||| ||||| Sbjct 238 AGTCAGAGGAGCCAAATTTT 257 >seq1432 Length=12607 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || || |||||||| || |||||||| || ||| | ||||||||||| |||||||||||| Sbjct 8828 CTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACATC 8887 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGAT 196868 || || ||||| || || ||| | || |||||||| | | | | || || Sbjct 8888 GCCTCCTACGCCTTGCTGACCATGATGATCGCCCAGCAGGTGGGCCTCGAGCCCGGAGAC 8947 Query 196869 TTCGTCTGGACGGGCGGCGA 196888 ||||||||||||||||| || Sbjct 8948 TTCGTCTGGACGGGCGGAGA 8967 >seq878 Length=51136 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| ||||||| | | || | |||| | || | | || | Sbjct 39593 GACCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTTTCGGCATAGCTTGGCC 39534 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | || ||||||||| | |||||||| ||| | ||| | | ||| | | ||| || Sbjct 39533 GACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAATGAATTG 39474 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 | ||| | ||| ||| ||||||||||| ||| ||||| || || ||| ||||| Sbjct 39473 ATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTGAACGAAAATGGCGTGCGTATC 39414 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGG 196307 ||||| || ||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct 39413 TGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 39357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770207762969320