Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acytostelium_20ellipticum_20[genbank_20GCA_5F900092235.1_202017-01- 02] 10,327 sequences; 62,160,181 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq1432 172 2e-38 seq250 143 1e-29 seq329 127 8e-25 >seq1432 Length=12607 Score = 172 bits (190), Expect = 2e-38 Identities = 388/572 (68%), Gaps = 12/572 (2%) Strand=Plus/Plus Query 51807 AAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTG 51866 ||||||||||| ||||||||||||||| ||||| ||| ||| | | ||| | Sbjct 8471 AAGGGCTTCCCCCTCATCACCACCAAGCGCGTGCACTTCAAATCCATCGCGTACGAGCTC 8530 Query 51867 CTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATT 51926 || ||||| || ||| | | |||||| |||| || |||| |||| || Sbjct 8531 CTCTGGTTCCTGCAGGGTGATTCCAACGTCGGGTGGCTCCGCGAGAACGGGGTCACGATC 8590 Query 51927 TGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGT 51986 |||||||| ||||| |||||| || |||| || || || || || |||||||||| Sbjct 8591 TGGGACGAGTGGGCCGATGAATCCGGCGACCTCGGCCCGGTCTACGGGGTGCAGTGGCGT 8650 Query 51987 AGTTGG--GATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCAA 52044 ||| || || || | || || |||||| ||| || || || || | || Sbjct 8651 TCGTGGCCGACGCCGGACGGGGGGAG--CATCGACCAGCTCTCCGACGTGATCGAG-CAG 8707 Query 52045 TTAAGAACGATC--CTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTT 52102 | || || || | || || |||| ||| || ||||| ||||| || || | Sbjct 8708 ATCCGA-CGCTCGCCCGACTCCCGTCGGCTCATCGTGTCTGCCTGGAACCCGGCCGACAT 8766 Query 52103 GGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAA 52162 || |||||| | || ||||| || | || ||||| ||||| || || || || || Sbjct 8767 CCCGGACATGGCGCTCGCGCCCTGTCACGCGCTGTTCCAGTTCTACGTCGCCGACGGCAA 8826 Query 52163 GCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACAT 52222 ||| ||||| || |||||||||| |||||||||||| | || || ||||| ||||| Sbjct 8827 GCTCTCGTGTCAGCTGTATCAGCGCAGCGCCGACATGTTCCTCGGTGTGCCGTTCAACAT 8886 Query 52223 TGCCAGCTATTCCTTGCTGACGCAT-CTGATTGCTCGAGCA-GTTGGCCTTGATGTTGGT 52280 ||| ||| |||||||||| ||| |||| || | |||| || ||||| || || Sbjct 8887 CGCCTCCTACGCCTTGCTGAC-CATGATGATCGC-CCAGCAGGTGGGCCTCGAGCCCGGA 8944 Query 52281 GAATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCATGTAGATCAGGTTAGG 52340 || ||| | ||||| || || ||| ||| ||||| |||| || || |||||||| || Sbjct 8945 GACTTCGTCTGGACGGGCGGAGACTGCCACGTCTACGACAATCACGTCGATCAGGTGCGG 9004 Query 52341 GAACAGTGTAGTCGCGTGCCATATCCGTTCCC 52372 || ||| || || | ||| || || | ||| Sbjct 9005 GAGCAGCTCAGCCGTGAGCCCTACCCCTACCC 9036 >seq250 Length=59172 Score = 143 bits (158), Expect = 1e-29 Identities = 294/436 (67%), Gaps = 6/436 (1%) Strand=Plus/Minus Query 51799 ACCTGAGTAAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCG 51858 ||||| | | ||||||||||| |||||||||||||| |||| | | || | || Sbjct 46851 ACCTGGGCGACGGCTTCCCGCTGGTCACCACCAAGAAGCTGCACCTGCGGTCGATCATCC 46792 Query 51859 GGGAGTTGCTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCG 51918 ||| |||||||||| || |||| || ||| || | | ||| | || | Sbjct 46791 ATGAGCTGCTGTGGTTCCTGAAGGGCGACACCAACATCGGCTACCTCACCGACAACCAGG 46732 Query 51919 TCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGC 51978 | |||| |||||||| ||||| |||| || || |||||||||| | || || |||| Sbjct 46731 TGCGCATCTGGGACGAGTGGGCCGATGCCAACGGCGACCTGGGTCCGATCTACGGCAAGC 46672 Query 51979 AGTGGCGTAGTTGGG---ATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCG 52035 | ||||| || |||| || | |||||||| |||||| ||||| || | | Sbjct 46671 AATGGCGCAGCTGGGCCACCGCCGATGGCGGCA---GCATCGACCAGATGCAGTGGCTGG 46615 Query 52036 TCAAATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGG 52095 | | || ||| | | || ||| || |||| | ||| || ||||| |||| Sbjct 46614 TGGAGGAGATCAAGCGCAACCCCGATTCGCGGCGGCTGGTGGTCAGCGCCTGGAACGTGG 46555 Query 52096 GTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTG 52155 | || || | ||||||||| |||||||| | || ||||| ||||| || | | Sbjct 46554 GCGAGCTGTCGCAGATGGCGTTGATGCCCTGCCACAACCTGTTCCAGTTCTACGTGGTGG 46495 Query 52156 AAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGT 52215 | || ||||| ||||| ||||| ||||| | |||||| ||| ||||||| |||| Sbjct 46494 ACGGCAAGCTCAGCTGCCAGTTGTACCAGCGCAGCGGCGACATCTTCCTGGGCGTGCCGT 46435 Query 52216 TTAACATTGCCAGCTA 52231 | ||||| |||||||| Sbjct 46434 TCAACATCGCCAGCTA 46419 >seq329 Length=161735 Score = 127 bits (140), Expect = 8e-25 Identities = 225/324 (69%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 51924 ATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGG 51983 || ||||| || ||||| |||||||| ||| ||||||| ||||| ||||| || ||| Sbjct 13324 ATCTGGGATGAGTGGGCTGATGAAAACGGTGACCTGGGCCCTGTTTATGGATCACAATGG 13383 Query 51984 CGTAGTTGGG---ATGCTGGTGGCGGCAAGGTCATCGATCAGATC-CATGAAGTCGTCAA 52039 ||| ||| | | | |||||| | ||| || ||||| || || | ||| Sbjct 13384 CGTTCATGGCCAAAACCAGATGGCGGGCA---CATTGACCAGATTACACAAATTATACAA 13440 Query 52040 ATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGA 52099 | | || || ||| |||| ||| || || ||||| ||||| |||||||||| || Sbjct 13441 A-CTATAAAAAACAATCCCGATTCCAGAAGGATTATTGTGTCTGCCTGGAATGTGGCAGA 13499 Query 52100 TTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGG 52159 | || ||||||| | | ||||||||| | | ||||| || ||||||||||| || Sbjct 13500 GATAGAACATATGGCACTTCCACCCTGCCATGCCTTTTTCCAGTTTTATGTAGCTGACGG 13559 Query 52160 TAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAA 52219 || || || || | |||||||| ||| || || || |||| || || ||||| Sbjct 13560 AAAACTGAGCTGTCAGCTTTATCAGCGAAGTGCAGATATTTTTCTGGGGGTACCTTTTAA 13619 Query 52220 CATTGCCAGCTATTCCTTGCTGAC 52243 ||||||| |||| |||| ||||| Sbjct 13620 CATTGCCTCCTATGCCTTACTGAC 13643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190072687933470